PhosF3C: a feature fusion architecture with fine-tuned protein language model and conformer for prediction of general phosphorylation site. - Yuhuan Liu; Xueying Wang; Haitian Zhong; Jixiu Zhai; Xiaojuan Gong; Tianchi Lu (Briefings Bioinform., 2025)

PDeepPP:A Deep learning framework with Pretrained Protein language for peptide classification. - Jixiu Zhai; Tianchi Lu; Haitian Zhong; Ziyang Xu; Yuhuan Liu; Xueying Wang; Dan Huang (CoRR, 2025)

SCMPPI: Supervised Contrastive Multimodal Framework for Predicting Protein-Protein Interactions. - Shengrui XU; Tianchi Lu; Zikun Wang; Jixiu Zhai (CoRR, 2025)