RNA Structural Homology Search with a Succinct Stochastic Grammar Model. - Yinglei Song; Jizhen Zhao; Chunmei Liu; Kan Liu; Russell L. Malmberg; Liming Cai (J. Comput. Sci. Technol., 2005)

Learning the Parameters of Stochastic Grammar Models for RNA Structures with Pseudoknots. - Jizhen Zhao; Liming Cai; Russell L. Malmberg (GrC, 2006)

Rapid ab initio RNA Folding Including Pseudoknots Via Graph Tree Decomposition. - Jizhen Zhao; Russell L. Malmberg; Liming Cai (WABI, 2006)

Operon Prediction in Microbial Genomes Using Decision Tree Approach. - Dongsheng Che; Jizhen Zhao; Liming Cai; Ying Xu 001 (CIBCB, 2007)

Comparative Pathway Prediction Via Unified Graph Modeling of Genomic Structure Information. - Jizhen Zhao; Dongsheng Che; Liming Cai (ISBRA, 2007)

Comparative Pathway Annotation with Protein-DNA Interaction and Operon Information via Graph Tree Decomposition. - Jizhen Zhao; Dongsheng Che; Liming Cai (Pacific Symposium on Biocomputing, 2007)