A Grammatical Representation of Visibly Pushdown Languages. - Joachim Baran; Howard Barringer (WoLLIC, 2007)

Forays into Sequential Composition and Concatenation in Eagle. - Joachim Baran; Howard Barringer (RV, 2008)

BioMart Central Portal: an open database network for the biological community. - Jonathan M. Guberman; Jiye Ai; Olivier Arnaiz; Joachim Baran; Andrew Blake 003; Richard A. Baldock; Claude Chelala; David Croft 001; Anthony Cros; Rosalind J. Cutts; Alex Di Génova; Simon A. Forbes; et al. (Database J. Biol. Databases Curation, 2011)

International Cancer Genome Consortium Data Portal - a one-stop shop for cancer genomics data. - Junjun Zhang; Joachim Baran; Anthony Cros; Jonathan M. Guberman; Syed Haider; Jack Hsu; Yong Liang 004; Elena Rivkin; Jianxin Wang; Brett Whitty; Marie Wong-Erasmus; Long Yao; et al. (Database J. Biol. Databases Curation, 2011)

BioMart: a data federation framework for large collaborative projects. - Junjun Zhang; Syed Haider; Joachim Baran; Anthony Cros; Jonathan M. Guberman; Jack Hsu; Yong Liang 004; Long Yao; Arek Kasprzyk (Database J. Biol. Databases Curation, 2011)

The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery. - Michel Dumontier; Christopher J. O. Baker; Joachim Baran; Alison Callahan; Leonid L. Chepelev; Jose Cruz-Toledo; Nicholas R. Del Rio; Geraint Duck; Laura Inés Furlong; Nichealla Keath; Dana Klassen; Jamie P. McCusker; et al. (J. Biomed. Semant., 2014)

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. - Toshiaki Katayama; Mark D. Wilkinson; Kiyoko F. Aoki-Kinoshita; Shuichi Kawashima; Yasunori Yamamoto; Atsuko Yamaguchi; Shinobu Okamoto; Shin Kawano; Jin-Dong Kim; Yue Wang 040; Hongyan Wu; Yoshinobu Kano; et al. (J. Biomed. Semant., 2014)

WormBase 2014: new views of curated biology. - Todd W. Harris; Joachim Baran; Tamberlyn Bieri; Abigail Cabunoc; Juancarlos Chan; Wen J. Chen; Paul Davis 001; James Done; Christian A. Grove; Kevin L. Howe; Ranjana Kishore; Raymond Y. N. Lee; et al. (Nucleic Acids Res., 2014)

FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation. - Jerven T. Bolleman; Christopher J. Mungall; Francesco Strozzi; Joachim Baran; Michel Dumontier; Raoul Jean Pierre Bonnal; Robert M. Buels; Robert Hoehndorf; Takatomo Fujisawa; Toshiaki Katayama; Peter J. A. Cock (J. Biomed. Semant., 2016)

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. - Toshiaki Katayama; Shuichi Kawashima; Gos Micklem; Shin Kawano; Jin-Dong Kim; Simon Kocbek; Shinobu Okamoto; Yue Wang 040; Hongyan Wu; Atsuko Yamaguchi; Yasunori Yamamoto; Erick Antezana; et al. (F1000Research, 2019)