CASPAR: a hierarchical bayesian approach to predict survival times in cancer from gene expression data. - Lars Kaderali; Thomas Zander; Ulrich Faigle; Jürgen Wolf; Joachim L. Schultze; Rainer Schrader (Bioinform., 2006)

IlluminaGUI: Graphical User Interface for analyzing gene expression data generated on the Illumina platform. - Joachim L. Schultze; Daniela Eggle (Bioinform., 2007)

The development of a comparison approach for Illumina bead chips unravels unexpected challenges applying newest generation microarrays. - Daniela Eggle; Svenja Debey-Pascher; Marc Beyer; Joachim L. Schultze (BMC Bioinform., 2009)

Web-TCGA: an online platform for integrated analysis of molecular cancer data sets. - Mario Deng; Johannes Brägelmann; Joachim L. Schultze; Sven Perner (BMC Bioinform., 2016)

ImpulseDE: detection of differentially expressed genes in time series data using impulse models. - Jil Sander; Joachim L. Schultze; Nir Yosef (Bioinform., 2017)

Accelerated Genomics Data Processing using Memory-Driven Computing. - Matthias Becker 003; Hartmut Schultze; Thomas Ulas; Sharad Singhal; Joachim L. Schultze; Milind Chabbi; Stefanie Warnat-Herresthal; Umesh Worlikar; Shobhit Agrawal; Jaydeep Bhat; Jonas Schulte-Schrepping; Kevin E. Bassler; et al. (BIBM, 2019)

Scaling Genomics Data Processing with Memory-Driven Computing to Accelerate Computational Biology. - Matthias Becker 003; Umesh Worlikar; Shobhit Agrawal; Hartmut Schultze; Thomas Ulas; Sharad Singhal; Joachim L. Schultze (ISC, 2020)

DrugDiff: small molecule diffusion model with flexible guidance towards molecular properties. - Marie Oestreich; Erinc Merdivan; Michael Lee; Joachim L. Schultze; Marie Piraud; Matthias Becker 003 (J. Cheminformatics, 2025)