Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline. - Joachim M. De Schrijver; Kim De Leeneer; Steve Lefever; Nick Sabbe; Filip Pattyn; Filip Van Nieuwerburgh; Paul Coucke; Dieter Deforce; Jo Vandesompele; Sofie Bekaert; Jan Hellemans; Wim Van Criekinge (BMC Bioinform., 2010)

Accurate Long Read Mapping using Enhanced Suffix Arrays. - Michaël Vyverman; Joachim M. De Schrijver; Wim Van Criekinge; Peter Dawyndt; Veerle Fack (BIOINFORMATICS, 2011)

Improved base-calling and quality scores for 454 sequencing based on a Hurdle Poisson model. - Kristof De Beuf; Joachim M. De Schrijver; Olivier Thas; Wim Van Criekinge; Rafael A. Irizarry; Lieven Clement (BMC Bioinform., 2012)