Freiburg RNA tools: a central online resource for RNA-focused research and teaching. - Martin Raden; Syed M. Ali; Omer S. Alkhnbashi; Anke Busch; Fabrizio Costa; Jason A. Davis; Florian Eggenhofer; Rick Gelhausen; Jens Georg; Steffen Heyne; Michael Hiller; Kousik Kundu; et al. (Nucleic Acids Res., 2018)

Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization. - Joachim Wolff; Vivek Bhardwaj 002; Stephan Nothjunge; Gautier Richard; Gina Renschler; Ralf Gilsbach; Thomas Manke; Rolf Backofen; Fidel Ramírez; Björn A. Grüning (Nucleic Acids Res., 2018)

Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization. - Joachim Wolff; Leily Rabbani; Ralf Gilsbach; Gautier Richard; Thomas Manke; Rolf Backofen; Björn A. Grüning (Nucleic Acids Res., 2020)

pyGenomeTracks: reproducible plots for multivariate genomic datasets. - Lucille Lopez-Delisle; Leily Rabbani; Joachim Wolff; Vivek Bhardwaj 002; Rolf Backofen; Björn A. Grüning; Fidel Ramírez; Thomas Manke (Bioinform., 2021)

Scool: a new data storage format for single-cell Hi-C data. - Joachim Wolff; Nezar Abdennur; Rolf Backofen; Björn A. Grüning (Bioinform., 2021)

Robust and efficient single-cell Hi-C clustering with approximate k-nearest neighbor graphs. - Joachim Wolff; Rolf Backofen; Björn A. Grüning (Bioinform., 2021)

Approaches to analysis of chromosome conformation capture data - Joachim Wolff (2022)