A reconstruction problem for a class of phylogenetic networks with lateral gene transfers. - Gabriel Cardona; Joan Carles Pons; Francesc Rosselló (Algorithms Mol. Biol., 2015)

Nonbinary tree-based networks: characterisations, metrics, and support trees. - Joan Carles Pons; Charles Semple; Mike A. Steel (CoRR, 2017)

Generation of Tree-Child phylogenetic networks. - Gabriel Cardona; Joan Carles Pons; Céline Scornavacca (CoRR, 2019)

IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes. - David Páez-Espino; Simon Roux; I-Min A. Chen; Krishna Palaniappan; Anna Ratner; Ken Chu; Marcel Huntemann; T. B. K. Reddy; Joan Carles Pons; Mercè Llabrés; Emiley A. Eloe-Fadrosh; Natalia N. Ivanova; et al. (Nucleic Acids Res., 2019)

Generation of Binary Tree-Child phylogenetic networks. - Gabriel Cardona; Joan Carles Pons; Céline Scornavacca (PLoS Comput. Biol., 2019)

Correction: Generation of Binary Tree-Child phylogenetic networks. - Gabriel Cardona; Joan Carles Pons; Céline Scornavacca (PLoS Comput. Biol., 2019)

Generation of Level-kk LGT Networks. - Joan Carles Pons; Céline Scornavacca; Gabriel Cardona (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families. - Joan Carles Pons; David Páez-Espino; Gabriel Riera; Natalia Ivanova; Nikos Kyrpides; Mercè Llabrés (Bioinform., 2021)

Comparison of orchard networks using their extended μ-representation. - Gabriel Cardona; Joan Carles Pons; Gerard Ribas; Tomás Martínez Coronado (CoRR, 2023)

Comparison of Orchard Networks Using Their Extended $ mu$μ-Representation. - Gabriel Cardona; Joan Carles Pons; Gerard Ribas; Tomás Martínez Coronado (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)