Compression ratios based on the Universal Similarity Metric still yield protein distances far from CATH distances - Jairo Rocha; Francesc Rosselló; Joan Segura (CoRR, 2006)

aGEM: an integrative system for analyzing spatial-temporal gene-expression information. - Natalia Jiménez-Lozano; Joan Segura; José Ramón Macías; Juanjo Vega; José María Carazo (Bioinform., 2009)

Flexible structural protein alignment by a sequence of local transformations. - Jairo Rocha; Joan Segura; Richard C. Wilson 001; Swagata Dasgupta (Bioinform., 2009)

Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi Diagrams. - Joan Segura; Pamela F. Jones; Narcis Fernandez-Fuentes (BMC Bioinform., 2011)

PCRPi-DB: a database of computationally annotated hot spots in protein interfaces. - Joan Segura; Narcis Fernandez-Fuentes (Nucleic Acids Res., 2011)

Integrating human and murine anatomical gene expression data for improved comparisons. - Natalia Jiménez-Lozano; Joan Segura; José Ramón Macías; Juanjo Vega; José María Carazo (Bioinform., 2012)

A holistic in silico approach to predict functional sites in protein structures. - Joan Segura; Pamela F. Jones; Narcis Fernandez-Fuentes (Bioinform., 2012)

CAPS-DB: a structural classification of helix-capping motifs. - Joan Segura; Baldomero Oliva; Narcis Fernandez-Fuentes (Nucleic Acids Res., 2012)

Frag'r'Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design. - Jaume Bonet; Joan Segura; Joan Planas-Iglesias; Baldomero Oliva; Narcis Fernandez-Fuentes (Bioinform., 2014)

Using neighborhood cohesiveness to infer interactions between protein domains. - Joan Segura; Carlos Oscar Sánchez Sorzano; Jesús Cuenca Alba; Patrick Aloy; José María Carazo (Bioinform., 2015)

3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures. - Joan Segura; Rubén Sánchez García; Marta Martínez; Jesús Cuenca Alba; Daniel Tabas-Madrid; Carlos Oscar Sánchez Sorzano; José María Carazo (Bioinform., 2017)

BIPSPI: a method for the prediction of partner-specific protein-protein interfaces. - Rubén Sánchez García; Carlos Oscar Sánchez Sorzano; José María Carazo; Joan Segura (Bioinform., 2019)

Validation of electron microscopy initial models via small angle X-ray scattering curves. - Amaya Jiménez; Slavica Jonic; Tomás Majtner; Joaquín Otón; Jose Luis Vilas; David Maluenda; Javier Mota; Erney Ramírez-Aportela; Marta Martínez; Yaiza Rancel; Joan Segura; Rubén Sánchez García; et al. (Bioinform., 2019)

3DBIONOTES v3.0: crossing molecular and structural biology data with genomic variations. - Joan Segura; Rubén Sánchez García; Carlos Oscar Sánchez Sorzano; José María Carazo (Bioinform., 2019)

RCSB Protein Data Bank 1D tools and services. - Joan Segura; Yana Rose; John D. Westbrook; Stephen K. Burley; Jose M. Duarte (Bioinform., 2021)

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences. - Stephen K. Burley; Charmi Bhikadiya; Chunxiao Bi; Sebastian Bittrich; Li Chen 022; Gregg V. Crichlow; Cole H. Christie; Kenneth Dalenberg; Luigi Di Costanzo; Jose M. Duarte; Shuchismita Dutta; Zukang Feng; et al. (Nucleic Acids Res., 2021)

RCSB Protein Data Bank: improved annotation, search and visualization of membrane protein structures archived in the PDB. - Sebastian Bittrich; Yana Rose; Joan Segura; Robert Lowe; John D. Westbrook; Jose M. Duarte; Stephen K. Burley (Bioinform., 2022)

RCSB Protein Data Bank 1D3D module: displaying positional features on macromolecular assemblies. - Joan Segura; Yana Rose; Sebastian Bittrich; Stephen K. Burley; Jose M. Duarte (Bioinform., 2022)

RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning. - Stephen K. Burley; Charmi Bhikadiya; Chunxiao Bi; Sebastian Bittrich; Henry Chao; Li Chen 022; Paul A. Craig; Gregg V. Crichlow; Kenneth Dalenberg; Jose M. Duarte; Shuchismita Dutta; Maryam Fayazi; et al. (Nucleic Acids Res., 2023)

RCSB Protein Data Bank: visualizing groups of experimentally determined PDB structures alongside computed structure models of proteins. - Joan Segura; Yana Rose; Chunxiao Bi; Jose M. Duarte; Stephen K. Burley; Sebastian Bittrich (Frontiers Bioinform., 2023)