IDEA: Interactive Display for Evolutionary Analyses. - Amy Egan; Anup Mahurkar; Jonathan Crabtree; Jonathan H. Badger; Jane M. Carlton; Joana C. Silva (BMC Bioinform., 2008)

Cryptosporidium hominis gene catalog: a resource for the selection of novel Cryptosporidium vaccine candidates. - Olukemi O. Ifeonu; Raphael Simon; Sharon M. Tennant; Abhineet S. Sheoran; Maria C. Daly; Victor Felix; Jessica C. Kissinger; Giovanni Widmer; Myron M. Levine; Saul Tzipori; Joana C. Silva (Database J. Biol. Databases Curation, 2016)

STRIDE: a command-line HMM-based identifier and sub-classifier of Plasmodium falciparum RIFIN and STEVOR variant surface antigen families. - Albert E. Zhou; Zalak V. Shah; Katie R. Bradwell; James B. Munro; Andrea A. Berry; David Serre; Shannon Takala-Harrison; Timothy D. O'Connor; Joana C. Silva; Mark A. Travassos (BMC Bioinform., 2022)