New Results for the Martin Polynomial. - Joanna A. Ellis-Monaghan (J. Comb. Theory B, 1998)

Identities for circuit partition polynomials, with applications to the Tutte polynomial. - Joanna A. Ellis-Monaghan (Adv. Appl. Math., 2004)

Exploring the Tutte-Martin connection. - Joanna A. Ellis-Monaghan (Discret. Math., 2004)

Some remarks on domination. - Dan Archdeacon; Joanna A. Ellis-Monaghan; David C. Fisher; Dalibor Froncek; Peter Che Bor Lam; Suzanne M. Seager; Bing Wei 001; Raphael Yuster (J. Graph Theory, 2004)

Decycling of Fibonacci cubes. - Joanna A. Ellis-Monaghan; David A. Pike; Yubo Zou (Australas. J Comb., 2006)

Parametrized Tutte Polynomials of Graphs and Matroids. - Joanna A. Ellis-Monaghan; Lorenzo Traldi (Comb. Probab. Comput., 2006)

Distance Hereditary Graphs and the Interlace Polynomial. - Joanna A. Ellis-Monaghan; Irasema Sarmiento (Comb. Probab. Comput., 2007)

How to Exhibit Toroidal Maps in Space. - Dan Archdeacon; C. Paul Bonnington; Joanna A. Ellis-Monaghan (Discret. Comput. Geom., 2007)

Unit Rectangle Visibility Graphs. - Alice M. Dean; Joanna A. Ellis-Monaghan; Sarah Hamilton; Greta Pangborn (Electron. J. Comb., 2008)

A little statistical mechanics for the graph theorist. - Laura Beaudin; Joanna A. Ellis-Monaghan; Greta Pangborn; Robert Shrock (Discret. Math., 2010)

Graph Polynomials and Their Applications I: The Tutte Polynomial. - Joanna A. Ellis-Monaghan; Criel Merino (Structural Analysis of Complex Networks, 2011)

Graph Polynomials and Their Applications II: Interrelations and Interpretations. - Joanna A. Ellis-Monaghan; Criel Merino (Structural Analysis of Complex Networks, 2011)

The Tutte-Potts connection in the presence of an external magnetic field. - Joanna A. Ellis-Monaghan; Iain Moffatt (Adv. Appl. Math., 2011)

A recipe theorem for the topological Tutte polynomial of Bollobás and Riordan. - Joanna A. Ellis-Monaghan; Irasema Sarmiento (Eur. J. Comb., 2011)

Graphs on Surfaces - Dualities, Polynomials, and Knots. - Joanna A. Ellis-Monaghan; Iain Moffatt (Springer, 2013)

A Penrose polynomial for embedded graphs. - Joanna A. Ellis-Monaghan; Iain Moffatt (Eur. J. Comb., 2013)

Minimal Tile and Bond-Edge Types for Self-Assembling DNA Graphs. - Joanna A. Ellis-Monaghan; Greta Pangborn; Laura Beaudin; David Miller; Nick Bruno; Akie Hashimoto (Discrete and Topological Models in Molecular Biology, 2014)

Evaluations of Topological Tutte Polynomials. - Joanna A. Ellis-Monaghan; Iain Moffatt (Comb. Probab. Comput., 2015)

The Las Vergnas polynomial for embedded graphs. - Joanna A. Ellis-Monaghan; Iain Moffatt (Eur. J. Comb., 2015)

DNA origami and the complexity of Eulerian circuits with turning costs. - Joanna A. Ellis-Monaghan; Andrew McDowell; Iain Moffatt; Greta Pangborn (Nat. Comput., 2015)

Graph Polynomials: Towards a Comparative Theory (Dagstuhl Seminar 16241). - Joanna A. Ellis-Monaghan; Andrew J. Goodall; Johann A. Makowsky; Iain Moffatt (Dagstuhl Reports, 2016)

Design tools for reporter strands and DNA origami scaffold strands. - Joanna A. Ellis-Monaghan; Greta Pangborn; Nadrian C. Seeman; Sam Blakeley; Conor Disher; Mary Falcigno; Brianna Healy; Ada Morse; Bharti Singh; Melissa Westland (Theor. Comput. Sci., 2017)

Preface: Special issue on the Tutte polynomial. - Joanna A. Ellis-Monaghan; Joseph P. S. Kung; Iain Moffatt (Adv. Appl. Math., 2018)

Comparative Theory for Graph Polynomials (Dagstuhl Seminar 19401). - Joanna A. Ellis-Monaghan; Andrew J. Goodall; Iain Moffatt; Kerri Morgan (Dagstuhl Reports, 2019)

Edge-outer graph embedding and the complexity of the DNA reporter strand problem. - Mark N. Ellingham; Joanna A. Ellis-Monaghan (Theor. Comput. Sci., 2019)

New dualities from old: generating geometric, Petrie, and Wilson dualities and trialities of ribbon graphs. - Lowell Abrams; Joanna A. Ellis-Monaghan (Comb. Probab. Comput., 2022)

A Catalog of Enumeration Formulas for Bouquet and Dipole Embeddings under Symmetries. - Mark N. Ellingham; Joanna A. Ellis-Monaghan (Symmetry, 2022)

Bi-eulerian embeddings of graphs and digraphs. - Mark N. Ellingham; Joanna A. Ellis-Monaghan (Eur. J. Comb., 2025)