SNP interaction detection with Random Forests in high-dimensional genetic data. - Stacey J. Winham; Colin L. Colby; Robert R. Freimuth; Xin Wang; Mariza de Andrade; Marianne Huebner; Joanna M. Biernacka (BMC Bioinform., 2012)

A weighted random forests approach to improve predictive performance. - Stacey J. Winham; Robert R. Freimuth; Joanna M. Biernacka (Stat. Anal. Data Min., 2013)

Identification of missing variants by combining multiple analytic pipelines. - Yingxue Ren; Joseph S. Reddy; Cyril Pottier; Vivekananda Sarangi; Shulan Tian; Jason P. Sinnwell; Shannon K. McDonnell; Joanna M. Biernacka; Minerva M. Carrasquillo; Owen A. Ross; Nilüfer Ertekin-Taner; Rosa Rademakers; et al. (BMC Bioinform., 2018)

Detecting Major Depressive Disorder from Clinical Notes using Neural Language Models with Distant Supervision. - Bhavani Singh Agnikula Kshatriya; Nicolas A. Nunez; Manuel Gardea-Resendez; Euijung Ryu; Brandon J. Coombes; Sunyang Fu; Mark A. Frye; Joanna M. Biernacka; Yanshan Wang (AMIA, 2021)

Extracting Social Isolation Information From Psychiatric Notes in the Electronic Health Records. - Lauren A. Lepow; Braja Gopal Patra; Isotta Landi; Prakash Adekkanattu; Jyotishman Pathak; Mark Olfson; J. John Mann; Euijung Ryu; Joanna M. Biernacka; Girish N. Nadkarni; Priya Wickramaratne; Myrna Weissman; et al. (AMIA, 2021)

Neural Language Models with Distant Supervision to Identify Major Depressive Disorder from Clinical Notes. - Bhavani Singh Agnikula Kshatriya; Nicolas A. Nunez; Manuel Gardea-Resendez; Euijung Ryu; Brandon J. Coombes; Sunyang Fu; Mark A. Frye; Joanna M. Biernacka; Yanshan Wang (CoRR, 2021)

Extracting social determinants of health from electronic health records using natural language processing: a systematic review. - Braja Gopal Patra; Mohit Manoj Sharma; Veer Vekaria; Prakash Adekkanattu; Olga V. Patterson; Benjamin S. Glicksberg; Lauren A. Lepow; Euijung Ryu; Joanna M. Biernacka; Al'ona Furmanchuk; Thomas J. George; William R. Hogan; et al. (J. Am. Medical Informatics Assoc., 2021)

Identifying Major Depressive Disorder From Clinical Notes Using Neural Language Models with Distant Supervision. - Kurt Miller; Bhavani Singh Agnikula Kshatriya; Nicolas A. Nunez; Manuel Gardea-Resendez; Euijung Ryu; Brandon J. Coombes; Sunyang Fu; Mark A. Frye; Joanna M. Biernacka; Ming Huang 006; Yanshan Wang (ICHI, 2023)

Extracting Social Support and Social Isolation Information from Clinical Psychiatry Notes: Comparing a Rule-based NLP System and a Large Language Model. - Braja Gopal Patra; Lauren A. Lepow; Praneet Kasi Reddy Jagadeesh Kumar; Veer Vekaria; Mohit Manoj Sharma; Prakash Adekkanattu; Brian Fennessy; Gavin Hynes; Isotta Landi; Jorge A. Sanchez-Ruiz; Euijung Ryu; Joanna M. Biernacka; et al. (CoRR, 2024)

Extracting social support and social isolation information from clinical psychiatry notes: comparing a rule-based natural language processing system and a large language model. - Braja Gopal Patra; Lauren A. Lepow; Praneet Kasi Reddy Jagadeesh Kumar; Veer Vekaria; Mohit Manoj Sharma; Prakash Adekkanattu; Brian Fennessy; Gavin Hynes; Isotta Landi; Jorge A. Sanchez-Ruiz; Euijung Ryu; Joanna M. Biernacka; et al. (J. Am. Medical Informatics Assoc., 2025)