The mouse Gene Expression Database (GXD): 2014 update. - Constance M. Smith; Jacqueline H. Finger; Terry F. Hayamizu; Ingeborg J. McCright; Jingxia Xu; Joanne Berghout; Jeff Campbell; Lori E. Corbani; Kim L. Forthofer; Pete J. Frost; Dave Miers; David R. Shaw; et al. (Nucleic Acids Res., 2014)

A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations. - Vincent Gardeux; Joanne Berghout; Ikbel Achour; A. Grant Schissler; Qike Li; Colleen Kenost; Jianrong Li; Yuan Shang; Anthony Bosco; Donald Saner; Marilyn J. Halonen; Daniel Jackson 003; et al. (J. Am. Medical Informatics Assoc., 2017)

kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects. - Qike Li; A. Grant Schissler; Vincent Gardeux; Joanne Berghout; Ikbel Achour; Colleen Kenost; Haiquan Li; Hao Helen Zhang; Yves A. Lussier (J. Biomed. Informatics, 2017)

Single subject transcriptome analysis to identify functionally signed gene set or pathway activity. - Joanne Berghout; Qike Li; Nima Pouladi; Jianrong Li; Yves A. Lussier (PSB, 2018)

Session Introduction. - Yves A. Lussier; Joanne Berghout; Francesca Vitali; Kenneth S. Ramos; Maricel G. Kann; Jason H. Moore (PSB, 2018)

Interpretation of 'Omics dynamics in a single subject using local estimates of dispersion between two transcriptomes. - Qike Li; Samir Rachid Zaim; Dillon Aberasturi; Joanne Berghout; Haiquan Li; Francesca Vitali; Colleen Kenost; Hao Helen Zhang; Yves A. Lussier (AMIA, 2019)

Reading between the genes: interpreting non-coding DNA in high-throughput. - Joanne Berghout; Yves A. Lussier; Francesca Vitali; Martha L. Bulyk; Maricel G. Kann; Jason H. Moore (PSB, 2019)

Precision drug repurposing via convergent eQTL-based molecules and pathway targeting independent disease-associated polymorphisms. - Francesca Vitali; Joanne Berghout; Jung-wei Fan; Jianrong Li; Qike Li; Haiquan Li; Yves A. Lussier (PSB, 2019)

Developing a 'personalome' for precision medicine: emerging methods that compute interpretable effect sizes from single-subject transcriptomes. - Francesca Vitali; Qike Li; A. Grant Schissler; Joanne Berghout; Colleen Kenost; Yves A. Lussier (Briefings Bioinform., 2019)

binomialRF: interpretable combinatoric efficiency of random forests to identify biomarker interactions. - Samir Rachid Zaim; Colleen Kenost; Joanne Berghout; Wesley Chiu; Liam Wilson; Hao Helen Zhang; Yves A. Lussier (BMC Bioinform., 2020)

Correction to: binomialRF: interpretable combinatoric efficiency of random forests to identify biomarker interactions. - Samir Rachid Zaim; Colleen Kenost; Joanne Berghout; Wesley Chiu; Liam Wilson; Hao Helen Zhang; Yves A. Lussier (BMC Bioinform., 2020)

Computational Challenges and Artificial Intelligence in Precision Medicine. - Olga Afanasiev; Joanne Berghout; Steven E. Brenner; Martha L. Bulyk; Dana C. Crawford; Jonathan H. Chen; Roxana Daneshjou; Lukasz Kidzinski (PSB, 2021)

'Single-subject studies'-derived analyses unveil altered biomechanisms between very small cohorts: implications for rare diseases. - Dillon Aberasturi; Nima Pouladi; Samir Rachid Zaim; Colleen Kenost; Joanne Berghout; Walter W. Piegorsch; Yves A. Lussier (Bioinform., 2021)