Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale. - Joanne K. Liu; Edward J. O'Brien; Joshua A. Lerman; Karsten Zengler; Bernhard O. Palsson; Adam M. Feist (BMC Syst. Biol., 2014)

COBRAme: A computational framework for genome-scale models of metabolism and gene expression. - Colton J. Lloyd; Ali Ebrahim; Laurence Yang 001; Zachary A. King; Edward Catoiu; Edward J. O'Brien; Joanne K. Liu; Bernhard O. Palsson (PLoS Comput. Biol., 2018)

Predicting proteome allocation, overflow metabolism, and metal requirements in a model acetogen. - Joanne K. Liu; Colton J. Lloyd; Mahmoud M. Al-Bassam; Ali Ebrahim; Ji-Nu Kim; Connor A. Olson; Alexander Aksenov; Pieter C. Dorrestein; Karsten Zengler (PLoS Comput. Biol., 2019)