MOSCA: An Automated Pipeline for Integrated Metagenomics and Metatranscriptomics Data Analysis. - João Carlos Sequeira; Miguel Rocha 001; Maria Madalena Alves; Andreia Ferreira Salvador (PACBB, 2018)

Towards a Multivariate Analysis of Genome-Scale Metabolic Models Derived from the BiGG Models Database. - Alexandre Oliveira; Emanuel Cunha; Fernando Cruz; João Capela; João Carlos Sequeira; Marta Sampaio; Oscar Dias (PACBB, 2021)

Systematic assessment of template-based genome-scale metabolic models created with the BiGG Integration Tool. - Alexandre Oliveira; Emanuel Cunha; Fernando Cruz; João Capela; João Carlos Sequeira; Marta Sampaio; Cláudia Sampaio; Oscar Dias (J. Integr. Bioinform., 2022)

Meta-Omics Software for Community Analysis. - João Carlos Sequeira; Vítor Pereira 001; Maria Madalena Alves; Maria Alcina Pereira; Miguel Rocha 001; Andreia Ferreira Salvador (Zenodo, 2024)

KEGGCharter - A tool for representing genomic potential and transcriptomic expression into KEGG pathways. - João Carlos Sequeira; Miguel Rocha 001; Maria Madalena Alves; Andreia Ferreira Salvador (Zenodo, 2024)

Meta-Omics Software for Community Analysis. - João Carlos Sequeira; Miguel Rocha 001; Maria Madalena Alves; Andreia Ferreira Salvador (Zenodo, 2024)

reCOGnizer - A tool for domain based annotation with databases from the Conserved Domains Database. - João Carlos Sequeira; Miguel Rocha 001; Maria Madalena Alves; Andreia Ferreira Salvador (Zenodo, 2024)

reCOGnizer - A tool for domain based annotation with databases from the Conserved Domains Database. - João Carlos Sequeira; Miguel Rocha 001; Maria Madalena Alves; Andreia Ferreira Salvador (Zenodo, 2024)