An Algorithm to Assemble Gene-Protein-Reaction Associations for Genome-Scale Metabolic Model Reconstruction. - João G. R. Cardoso; Paulo Vilaça; Simão Soares; Miguel Rocha 001 (PRIB, 2012)

Optlang: An algebraic modeling language for mathematical optimization. - Kristian Jensen; João G. R. Cardoso; Nikolaus Sonnenschein (J. Open Source Softw., 2017)

Genome-Wide Semi-Automated Annotation of Transporter Systems. - Oscar Dias; Daniel Gomes; Paulo Vilaça; João G. R. Cardoso; Miguel Rocha 001; Eugénio C. Ferreira; Isabel Rocha (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

MARSI: metabolite analogues for rational strain improvement. - João G. R. Cardoso; Ahmad A. Zeidan; Kristian Jensen; Nikolaus Sonnenschein; Ana Rute Neves; Markus J. Herrgård (Bioinform., 2018)