AutoModel: A Client-Server Tool for Intuitive and Interactive Homology Modeling of Protein-Ligand Complexes. - João Luiz de Almeida Filho; Annabell Del Real Tamariz; Jorge H. Fernandez (BSB, 2018)

MDR SurFlexDock: A Semi-automatic Webserver for Discrete Receptor-Ensemble Docking. - João Luiz de Almeida Filho; Jorge Hernandez Fernandez (BSB, 2019)