ParKVFinder: A thread-level parallel approach in biomolecular cavity detection. - João Victor da Silva Guerra; Helder Veras Ribeiro filho; Leandro Oliveira Bortot; Rodrigo Vargas Honorato; José Geraldo de Carvalho Pereira; Paulo Sérgio Lopes-de-Oliveira (SoftwareX, 2020)

pyKVFinder: an efficient and integrable Python package for biomolecular cavity detection and characterization in data science. - João Victor da Silva Guerra; Helder Veras Ribeiro filho; Gabriel Ernesto Jara; Leandro Oliveira Bortot; José Geraldo de Carvalho Pereira; Paulo Sérgio Lopes-de-Oliveira (BMC Bioinform., 2021)

Cavity Characterization in Supramolecular Cages. - João Victor da Silva Guerra; Luiz F. G. Alves; Didier Bourissou; Paulo Sérgio Lopes-de-Oliveira; György Szalóki (J. Chem. Inf. Model., 2023)

KVFinder-web: a web-based application for detecting and characterizing biomolecular cavities. - João Victor da Silva Guerra; Helder Veras Ribeiro filho; José Geraldo de Carvalho Pereira; Paulo Sérgio Lopes-de-Oliveira (Nucleic Acids Res., 2023)

Exploring the potential of structure-based deep learning approaches for T cell receptor design. - Helder Veras Ribeiro filho; Gabriel Ernesto Jara; João Victor da Silva Guerra; Melyssa Cheung; Nathaniel R. Felbinger; José Geraldo de Carvalho Pereira; Brian G. Pierce; Paulo Sérgio Lopes-de-Oliveira (PLoS Comput. Biol., 2024)