Una Aproximación al Desarrollo de Software Basada en el Prototipado Arquitectónico. - Joaquín Peña; Rafael Corchuelo; Antonio Ruiz Cortés; Francisco J. Ferrer-Troyano; Miguel Toro (JISBD, 2000)

Facial Expression Recognition and Modeling for Virtual Intelligent Tutoring Systems. - Homero Ríos; Ana Luisa Solís; Emilio Aguirre; Lourdes Guerrero; Joaquín Peña; Alberto Santamaría (MICAI, 2000)

Towards Interaction Protocol Operations for Large Multi-agent Systems. - Joaquín Peña; Rafael Corchuelo; José Luis Arjona (FAABS, 2002)

Coping with Web Knowledge. - José Luis Arjona; Rafael Corchuelo; Joaquín Peña; David Ruiz 001 (AWIC, 2003)

Knowledge Channels. Bringing the Knowledge on the Web to Software Agents. - José Luis Arjona; Rafael Corchuelo; David Ruiz 001; Joaquín Peña; Miguel Toro (CAiSE Short Paper Proceedings, 2003)

Un Tratamiento Sensible a la Calidad para la Adquisición de Servicios Web. - Octavio Martín-Díaz; David Benavides 001; Joaquín Peña; Miguel Toro (JISBD, 2003)

Towards a Methodology for Multi-Agent System Coordination. - Joaquín Peña; Rafael Corchuelo; Octavio Martín-Díaz (JISBD, 2003)

A Top Down Approach for MAS Protocol Descriptions. - Joaquín Peña; Rafael Corchuelo; José Luis Arjona (SAC, 2003)

Can Agent Oriented Software Engineering Be Used to Build MASs Product Lines? - Joaquín Peña (WRAC, 2005)

Towards clarifying the importance of interactions in Agent-Oriented Software Engineering. - Joaquín Peña; Renato Levy; Rafael Corchuelo (Inteligencia Artif., 2005)

Building the Core Architecture of a NASA Multiagent System Product Line. - Joaquín Peña; Michael G. Hinchey; Antonio Ruiz Cortés; Pablo Trinidad (AOSE, 2006)

A Model-Driven Architecture Approach for Modeling, Specifying and Deploying Policies in Autonomous and Autonomic Systems. - Joaquín Peña; Michael G. Hinchey; Roy Sterritt; Antonio Ruiz Cortés; Manuel Resinas (DASC, 2006)

Software engineering and swarm-based systems. - Michael G. Hinchey; Roy Sterritt; Joaquín Peña; Christopher A. Rouff (SEAMS@ICSE, 2006)

Managing the Evolution of an Enterprise Architecture Using a MAS-Product-Line Approach. - Joaquín Peña; Michael G. Hinchey; Manuel Resinas; Roy Sterritt; James L. Rash (Software Engineering Research and Practice, 2006)

Multi-agent system product lines: challenges and benefits. - Joaquín Peña; Michael G. Hinchey; Antonio Ruiz Cortés (Commun. ACM, 2006)

MaCMAS CASE Tool Demonstration: MDD-based refinement of Collaboration-Based UML Models. - Joaquín Peña; Antonio Ruiz Cortés (JISBD, 2007)

Business Family Engineering - Managing the Evolution of Business Driven Systems. - Ildefonso Montero; Joaquín Peña; Antonio Ruiz Cortés (SPLC (2), 2007)

Mapping Feature Models onto Component Models to Build Dynamic Software Product Lines. - Pablo Trinidad; Antonio Ruiz Cortés; Joaquín Peña; David Benavides 001 (SPLC (2), 2007)

Using Formal Methods and Agent-Oriented Software Engineering for Modeling NASA Swarm-Based Systems. - Christopher A. Rouff; Michael G. Hinchey; Joaquín Peña; Antonio Ruiz Cortés (SIS, 2007)

Building and implementing policies in autonomous and autonomic systems using MaCMAS. - Joaquín Peña; Michael G. Hinchey; Roy Sterritt; Antonio Ruiz Cortés (Innov. Syst. Softw. Eng., 2007)

Designing and managing evolving systems using a MAS product line approach. - Joaquín Peña; Michael G. Hinchey; Manuel Resinas; Roy Sterritt; James L. Rash (Sci. Comput. Program., 2007)

A Top Down Approach for Describing the Acquaintace Organisation of Multiagent Systems. - Joaquín Peña; Rafael Corchuelo; Antonio Ruiz Cortés (Scalable Comput. Pract. Exp., 2007)

From Feature Models to Business Processes. - Ildefonso Montero; Joaquín Peña; Antonio Ruiz Cortés (IEEE SCC (2), 2008)

Representing Runtime Variability in Business-Driven Development Systems. - Ildefonso Montero; Joaquín Peña; Antonio Ruiz Cortés (ICCBSS, 2008)

Enabling the Evolution of Service-Oriented Solutions Using an UML2 Profile and a Reference Petri Nets Execution Platform. - Javier Fabra; Joaquín Peña; Antonio Ruiz Cortés; Joaquin Ezpeleta (ICIW, 2008)

Towards Visualisation and Analysis of Runtime Variability in Execution Time of Business Information Systems based on Product Lines. - Ildefonso Montero; Joaquín Peña; Antonio Ruiz Cortés (VaMoS, 2008)

Modelado de Negocio Interorganizacional: Una Aproximación para la Trazabilidad entre Objetivos, Modelos Organizacionales y Procesos de Negocio. - José Bocanegra; Joaquín Peña; Antonio Ruiz Cortés (CIbSE, 2009)

Hacia el enlace entre la estrategia empresarial mediante modelos de valor y el software de negocio: Un enfoque MDD. - José Bocanegra; Joaquín Peña; Antonio Ruiz Cortés (Rev. Avances en Sistemas Informática, 2009)

Una Aproximación MDD para Agilizar el Modelado de Negocio y su Especificación en Entornos Interorganizacionales. - José Bocanegra; Joaquín Peña; Antonio Ruiz-Cortés (CIbSE, 2010)

Modeling NASA swarm-based systems: using agent-oriented software engineering and formal methods. - Joaquín Peña; Christopher A. Rouff; Mike Hinchey; Antonio Ruiz Cortés (Softw. Syst. Model., 2011)

Region-Based Current-Source Reconstruction for the Inverse EEG Problem. - Joaquín Peña; José L. Marroquín (IEEE Trans. Biomed. Eng., 2011)

Dealing with Complexity in Agent-Oriented Software Engineering: The Importance of Interactions. - Joaquín Peña; Renato Levy; Mike Hinchey; Antonio Ruiz Cortés (Conquering Complexity, 2012)

A hierarchical algorithm for molecular similarity (H-FORMS). - Alonso Ramirez-Manzanares; Joaquín Peña; Jon M. Azpiroz; Gabriel Merino (J. Comput. Chem., 2015)

A GPU implementation of the Discontinuous Galerkin method for simulation of diffusion in brain tissue. - Daniel Cervantes; Miguel Angel Moreles; Joaquín Peña; Alonso Ramirez-Manzanares (CoRR, 2019)

Design Patterns for Board-Based Collaborative Work Management Tools. - Joaquín Peña; Alfonso Bravo; Adela del-Río-Ortega; Manuel Resinas; Antonio Ruiz-Cortés (CAiSE, 2021)

Productivity Challenges in Digital Transformation and its Implications for Workstream Collaboration Tools. - Adela del-Río-Ortega; Joaquín Peña; Manuel Resinas; Antonio Ruiz-Cortés (HICSS, 2021)

Catalogue of patterns for board-based tools. - Joaquín Peña; Alfonso Bravo; Adela del-Río-Ortega; Manuel Resinas; Antonio Ruiz-Cortés (Zenodo, 2021)

BPM in Digital Transformation: New Tools and Productivity Challenges. - Joaquín Peña; Alfonso Bravo; Manuel Resinas (BPM, 2022)

Board Miner: A Tool to Analyze the Use of Board-Based Collaborative Work Management Tools. - Alfonso Bravo; Cristina Cabanillas; Joaquín Peña; Manuel Resinas (ICSOC Workshops, 2022)

Analyzing the Evolution of Boards in Collaborative Work Management Tools. - Alfonso Bravo; Cristina Cabanillas; Joaquín Peña; Manuel Resinas (ICPM Workshops, 2024)