EDGAR: A software framework for the comparative analysis of prokaryotic genomes. - Jochen Blom; Stefan P. Albaum; Daniel Doppmeier; Alfred Pühler; Frank-Jörg Vorhölter; Martha Zakrzewski; Alexander Goesmann (BMC Bioinform., 2009)

Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. - Jochen Blom; Tobias Jakobi; Daniel Doppmeier; Sebastian Jaenicke; Jörn Kalinowski; Jens Stoye; Alexander Goesmann (Bioinform., 2011)

Comparative genomics on gene and single nucleotide level - Jochen Blom (2013)

EDGAR 2.0: an enhanced software platform for comparative gene content analyses. - Jochen Blom; Julian Kreis; Sebastian Spänig; Tobias Juhre; Claire Bertelli; Corinna Ernst; Alexander Goesmann (Nucleic Acids Res., 2016)

Genome Analysis of the Marine Bacterium Labrenzia sp. Strain 011, a Potential Protective Agent of Mollusks. - Jamshid Amiri Moghaddam; Antonio Dávila-Céspedes; Mohammad Alanjary; Jochen Blom; Gabriele M. König; Till F. Schäberle (Data, 2019)

The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR. - Daniel Wibberg; Bérénice Batut; Peter Belmann; Jochen Blom; Frank Oliver Glöckner; Björn A. Grüning; Nils Hoffmann; Nils Kleinbölting; René Rahn; Maja Rey; Uwe Scholz; Malvika Sharan; et al. (F1000Research, 2019)

EDGAR3.0: comparative genomics and phylogenomics on a scalable infrastructure. - Marius A. Dieckmann; Sebastian Beyvers; Rudel Christian Nkouamedjo-Fankep; Patrick Harald Georg Hanel; Lukas Jelonek; Jochen Blom; Alexander Goesmann (Nucleic Acids Res., 2021)

SV-MeCa: an XGBoost-based meta-caller approach for structural variant calling from short-read data. - Rudel Christian Nkouamedjo-Fankep; Arda Söylev; Anna-Lena Kobiela; Jochen Blom; Corinna Ernst; Susanne Motameny (BMC Bioinform., 2025)