APOPTO-CELL - a simulation tool and interactive database for analyzing cellular susceptibility to apoptosis. - Heinrich J. Huber; Markus Rehm 001; Martin Plchút; Heiko Düssmann; Jochen H. M. Prehn (Bioinform., 2007)

Diffusion is capable of translating anisotropic apoptosis initiation into a homogeneous execution of cell death. - Heinrich J. Huber; Maike A. Laussmann; Jochen H. M. Prehn; Markus Rehm 001 (BMC Syst. Biol., 2010)

Charge Profile Analysis Reveals That Activation of Pro-apoptotic Regulators Bax and Bak Relies on Charge Transfer Mediated Allosteric Regulation. - Crina-Maria Ionescu; Radka Svobodová Vareková; Jochen H. M. Prehn; Heinrich J. Huber; Jaroslav Koca (PLoS Comput. Biol., 2012)

miRNAmeConverter: an R/bioconductor package for translating mature miRNA names to different miRBase versions. - Stefan J. Haunsberger; Niamh M. C. Connolly; Jochen H. M. Prehn (Bioinform., 2017)

Colorectal tumour simulation using agent based modelling and high performance computing. - Guiyeom Kang; Claudio Márquez; Ana Barat; Annette T. Byrne; Jochen H. M. Prehn; Joan Sorribes; Eduardo César (Future Gener. Comput. Syst., 2017)

HCP: A Matlab package to create beautiful heatmaps with richly annotated covariates. - Manuela Salvucci; Jochen H. M. Prehn (J. Open Source Softw., 2019)

Heterogeneous responses to low level death receptor activation are explained by random molecular assembly of the Caspase-8 activation platform. - Anna Matveeva; Michael Fichtner; Katherine S. L. McAllister; Christopher McCann; Marc Sturrock; Daniel B. Longley; Jochen H. M. Prehn (PLoS Comput. Biol., 2019)

Phenomenological equations for electron transport chain-mediated reactive oxygen species metabolism. - Sandeep Chenna; Jochen H. M. Prehn; Niamh M. C. Connolly (BIBM, 2021)

tsRNAsearch: a pipeline for the identification of tRNA and ncRNA fragments from small RNA-sequencing data. - Paul D. Donovan; Natalie M. McHale; Morten T. Venø; Jochen H. M. Prehn (Bioinform., 2021)

FLINO: a new method for immunofluorescence bioimage normalization. - John F. Graf; Sanghee Cho; Elizabeth McDonough; Alex Corwin; Anup Sood; Andreas Lindner; Manuela Salvucci; Xanthi Stachtea; Sandra Van Schaeybroeck; Philip D. Dunne; Pierre Laurent-Puig; Daniel B. Longley; et al. (Bioinform., 2022)