Feedback Memetic Algorithms for Modeling Gene Regulatory Networks. - Christian Spieth; Felix Streichert; Jochen Supper; Nora Speer; Andreas Zell (CIBCB, 2005)

Reverse Engineering Non-Linear Gene Regulatory Networks Based on the Bacteriophage lambda cI Circuit. - Jochen Supper; Christian Spieth; Andreas Zell (CIBCB, 2005)

Analysis of MHC-Peptide Binding Using Amino Acid Property-Based Decision Rules. - Jochen Supper; Pierre Dönnes; Oliver Kohlbacher (ICAPR (1), 2005)

JCell - a Java-based framework for inferring regulatory networks from time series data. - Christian Spieth; Jochen Supper; Felix Streichert; Nora Speer; Andreas Zell (Bioinform., 2006)

Inferring Gene Regulatory Networks by Machine Learning Methods. - Jochen Supper; Holger Fröhlich; Christian Spieth; Andreas Dräger; Andreas Zell (APBC, 2007)

Gene Regulatory Network Inference via Regression Based Topological Refinement. - Jochen Supper; Holger Fröhlich; Andreas Zell (APBC, 2007)

Benchmarking evolutionary algorithms on convenience kinetics modelsof the valine and leucine biosynthesis in C. glutamicum. - Andreas Dräger; Marcel Kronfeld; Jochen Supper; Hannes Planatscher; Jørgen B. Magnus; Marco Oldiges; Andreas Zell (IEEE Congress on Evolutionary Computation, 2007)

Comparing various evolutionary algorithms on the parameter optimization of the valine and leucine biosynthesis in corynebacterium glutamicum. - Andreas Dräger; Jochen Supper; Hannes Planatscher; Jørgen B. Magnus; Marco Oldiges; Andreas Zell (IEEE Congress on Evolutionary Computation, 2007)

Reconstructing Linear Gene Regulatory Networks. - Jochen Supper; Christian Spieth; Andreas Zell (EvoBIO, 2007)

EDISA: extracting biclusters from multiple time-series of gene expression profiles. - Jochen Supper; Martin Strauch; Dierk Wanke; Klaus Harter; Andreas Zell (BMC Bioinform., 2007)

A Two-Step Clustering for 3-D Gene Expression Data Reveals the Main Features of the Arabidopsis Stress Response. - Martin Strauch; Jochen Supper; Christian Spieth; Dierk Wanke; Joachim Kilian; Klaus Harter; Andreas Zell (J. Integr. Bioinform., 2007)

Modeling gene regulation and spatial organization of sequence based motifs. - Jochen Supper; Claas aufm Kampe; Dierk Wanke; Kenneth W. Berendzen; Klaus Harter; Richard Bonneau; Andreas Zell (BIBE, 2008)

SBMLsqueezer: A CellDesigner plug-in to generate kinetic rate equations for biochemical networks. - Andreas Dräger; Nadine Hassis; Jochen Supper; Adrian Schröder; Andreas Zell (BMC Syst. Biol., 2008)

Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies. - Andreas Dräger; Marcel Kronfeld; Michael J. Ziller; Jochen Supper; Hannes Planatscher; Jørgen B. Magnus; Marco Oldiges; Oliver Kohlbacher; Andreas Zell (BMC Syst. Biol., 2009)

BowTieBuilder: modeling signal transduction pathways. - Jochen Supper; Lucía Spangenberg; Hannes Planatscher; Andreas Dräger; Adrian Schröder; Andreas Zell (BMC Syst. Biol., 2009)

Packaging design challenges of the IBM System z10 Enterprise Class server. - Thomas-Michael Winkel; Hubert Harrer; Dierk Kaller; Jochen Supper; Daniel M. Dreps; Kenneth L. Christian; D. Cosmadelis; Tingdong Zhou; Thomas Strach; J. Ludwig; David L. Edwards (IBM J. Res. Dev., 2009)

Computational inference of gene regulatory networks. - Jochen Supper (2009)

Optimal selection of epitopes for TXP-immunoaffinity mass spectrometry. - Hannes Planatscher; Jochen Supper; Oliver Poetz; Dieter Stoll; Thomas Joos; Markus F. Templin; Andreas Zell (Algorithms Mol. Biol., 2010)

Electronic packaging of the IBM System z196 enterprise-class server processor cage. - Thomas Strach; Frank E. Bosco; Kenneth L. Christian; Kevin R. Covi; Martin Eckert; Gregory R. Edlund; Roland Frech; Hubert Harrer; Andreas Huber; Dierk Kaller; Martin Kindscher; A. Z. Muszynski; et al. (IBM J. Res. Dev., 2012)