High-Performance Analysis of Biomolecular Containers to Measure Small-Molecule Transport, Transbilayer Lipid Diffusion, and Protein Cavities. - Alexander J. Bryer; Jodi A. Hadden-Perilla; John E. Stone; Juan R. Perilla (J. Chem. Inf. Model., 2019)

Scalable Analysis of Authentic Viral Envelopes on FRONTERA. - Fabio González-Arias; Tyler Reddy; John E. Stone; Jodi A. Hadden-Perilla; Juan R. Perilla (Comput. Sci. Eng., 2020)

AMBERff at Scale: Multimillion-Atom Simulations with AMBER Force Fields in NAMD. - Santiago Antolínez; Peter Eugene Jones; James C. Phillips; Jodi A. Hadden-Perilla (J. Chem. Inf. Model., 2024)