Computational knowledge integration in biopharmaceutical research. - David Ficenec; Mark Osborne; Joël R. Pradines; Daniel R. Richards; Ramon M. Felciano; Raymond J. Cho; Richard O. Chen; Ted Liefeld; James Owen; Alan Ruttenberg; Christian G. Reich; Joseph Horvath; et al. (Briefings Bioinform., 2003)

Analyzing Protein Lists with Large Networks: Edge-Count Probabilities in Random Graphs with Given Expected Degrees. - Joël R. Pradines; Victor Farutin; Steve Rowley; Vlado Dancík (J. Comput. Biol., 2005)

Connectedness Profiles in Protein Networks for the Analysis of Gene Expression Data. - Joël R. Pradines; Vlado Dancík; Alan Ruttenberg; Victor Farutin (RECOMB, 2007)

Enhancing reproducibility of gene expression analysis with known protein functional relationships: The concept of well-associated protein. - Joël R. Pradines; Victor Farutin; Nicholas A. Cilfone; Abouzar Ghavami; Elma Kurtagic; Jamey Guess; Anthony M. Manning; Ishan Capila (PLoS Comput. Biol., 2020)