Reversing Gene Erosion - Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order Data. - Joel V. Earnest-DeYoung; Emmanuelle Lerat; Bernard M. E. Moret (WABI, 2004)

Approximating the true evolutionary distance between two genomes. - Krister M. Swenson; Mark Marron; Joel V. Earnest-DeYoung; Bernard M. E. Moret (ACM J. Exp. Algorithmics, 2008)