BISEN: Biochemical Simulation Environment. - Joep Vanlier; Fan Wu 002; Feng Qi; Kalyan C. Vinnakota; Yu Han; Ranjan K. Dash; F. Yang; Daniel A. Beard (Bioinform., 2009)

Parameter adaptations during phenotype transitions in progressive diseases. - Christian A. Tiemann; Joep Vanlier; Peter A. J. Hilbers; Natal A. W. van Riel (BMC Syst. Biol., 2011)

An integrated strategy for prediction uncertainty analysis. - Joep Vanlier; Christian A. Tiemann; Peter A. J. Hilbers; Natal A. W. van Riel (Bioinform., 2012)

A Bayesian approach to targeted experiment design. - Joep Vanlier; Christian A. Tiemann; Peter A. J. Hilbers; Natal A. W. van Riel (Bioinform., 2012)

Parameter Trajectory Analysis to Identify Treatment Effects of Pharmacological Interventions. - Christian A. Tiemann; Joep Vanlier; Maaike H. Oosterveer; Albert K. Groen; Peter A. J. Hilbers; Natal A. W. van Riel (PLoS Comput. Biol., 2013)

Optimal experiment design for model selection in biochemical networks. - Joep Vanlier; Christian A. Tiemann; Peter A. J. Hilbers; Natal A. W. van Riel (BMC Syst. Biol., 2014)

Data2Dynamics: a modeling environment tailored to parameter estimation in dynamical systems. - Andreas Raue; Bernhard Steiert; Max Schelker; Clemens Kreutz; Tim Maiwald; Helge Hass; Joep Vanlier; Christian Tönsing; Lorenz Adlung; Raphael Engesser; Wolfgang Mader 002; Tim Heinemann; et al. (Bioinform., 2015)

Estimating chain length for time delays in dynamical systems using profile likelihood. - Adrian L. Hauber; Raphael Engesser; Joep Vanlier; Jens Timmer (Bioinform., 2020)