MACAT - microarray chromosome analysis tool. - Joern Toedling; Sebastian Schmeier; Matthias Heinig; Benjamin Georgi; Stefan Roepcke (Bioinform., 2005)

Transcript mapping with high-density oligonucleotide tiling arrays. - Wolfgang Huber; Joern Toedling; Lars M. Steinmetz (Bioinform., 2006)

Automated in-silico detection of cell populations in flow cytometry readouts and its application to leukemia disease monitoring. - Joern Toedling; Peter Rhein; Richard Ratei; Leonid Karawajew; Rainer Spang (BMC Bioinform., 2006)

Annotation-based distance measures for patient subgroup discovery in clinical microarray studies. - Claudio Lottaz; Joern Toedling; Rainer Spang (Bioinform., 2007)

Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts. - Joern Toedling; Oleg Sklyar; Wolfgang Huber (BMC Bioinform., 2007)

Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts. - Joern Toedling; Oleg Sklyar; Tammo Krueger; Jenny J. Fischer; Silke Sperling; Wolfgang Huber (BMC Bioinform., 2007)

Analyzing ChIP-chip Data Using Bioconductor. - Joern Toedling; Wolfgang Huber (PLoS Comput. Biol., 2008)

girafe - an R/Bioconductor package for functional exploration of aligned next-generation sequencing reads. - Joern Toedling; Constance Ciaudo; Olivier Voinnet; Edith Heard; Emmanuel Barillot (Bioinform., 2010)

ncPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq data. - Chong-Jian Chen; Nicolas Servant; Joern Toedling; Alexis Sarazin; Antonin Marchais; Evelyne Duvernois-Berthet; Valérie Cognat; Vincent Colot; Olivier Voinnet; Edith Heard; Constance Ciaudo; Emmanuel Barillot (Bioinform., 2012)

Neuroblastoma signalling models unveil combination therapies targeting feedback-mediated resistance. - Mathurin Dorel; Bertram Klinger; Tommaso Mari; Joern Toedling; Eric Blanc; Clemens Messerschmidt; Michal Nadler-Holly; Matthias Ziehm; Anja Sieber; Falk Hertwig; Dieter Beule; Angelika Eggert; et al. (PLoS Comput. Biol., 2021)