Single channel event (SCE) for managing sensor failures in MSPC. - Henk-Jan Ramaker; Eric N. M. van Sprang; Johan A. Westerhuis; Age K. Smilde (Comput. Chem. Eng., 2006)

Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA. - María José Nueda; Ana Conesa; Johan A. Westerhuis; Huub C. J. Hoefsloot; Age K. Smilde; Manuel Talón; Alberto Ferrer 001 (Bioinform., 2007)

Statistical validation of megavariate effects in ASCA. - Daniel J. Vis; Johan A. Westerhuis; Age K. Smilde; Jan van der Greef (BMC Bioinform., 2007)

How informative is your kinetic model?: using resampling methods for model invalidation. - Dicle Hasdemir; Huub C. J. Hoefsloot; Johan A. Westerhuis; Age K. Smilde (BMC Syst. Biol., 2014)

Use of prior knowledge for the analysis of high-throughput transcriptomics and metabolomics data. - Polina Reshetova; Age K. Smilde; Antoine H. C. van Kampen; Johan A. Westerhuis (BMC Syst. Biol., 2014)

Using Petri nets for experimental design in a multi-organ elimination pathway. - Polina Reshetova; Age K. Smilde; Johan A. Westerhuis; Antoine H. C. van Kampen (Comput. Biol. Medicine, 2015)

Separating common from distinctive variation. - Frans M. van der Kloet; Patricia Sebastián-León; Ana Conesa; Age K. Smilde; Johan A. Westerhuis (BMC Bioinform., 2016)

Variable selection for binary classification using error rate p-values applied to metabolomics data. - Mari van Reenen; Carolus J. Reinecke; Johan A. Westerhuis; J. Hendrik Venter (BMC Bioinform., 2016)

Metabolomics variable selection and classification in the presence of observations below the detection limit using an extension of ERp. - Mari van Reenen; Johan A. Westerhuis; Carolus J. Reinecke; J. Hendrik Venter (BMC Bioinform., 2017)

iTOP: inferring the topology of omics data. - Nanne Aben; Johan A. Westerhuis; Yipeng Song; Henk A. L. Kiers; Magali Michaut; Age K. Smilde; Lodewyk F. A. Wessels (Bioinform., 2018)

Training for translation between disciplines: a philosophy for life and data sciences curricula. - K. Anton Feenstra; Sanne Abeln; Johan A. Westerhuis; Filipe Brancos dos Santos; Douwe Molenaar; Bas Teusink; Huub C. J. Hoefsloot; Jaap Heringa (Bioinform., 2018)

Principal component analysis of binary genomics data. - Yipeng Song; Johan A. Westerhuis; Nanne Aben; Magali Michaut; Lodewyk F. A. Wessels; Age K. Smilde (Briefings Bioinform., 2019)

Variable selection and validation in multivariate modelling. - Lin Shi 005; Johan A. Westerhuis; Johan Rosén; Rikard Landberg; Carl Brunius (Bioinform., 2019)

All Sparse PCA Models Are Wrong, But Some Are Useful. Part I: Computation of Scores, Residuals and Explained Variance. - J. Camacho; Age K. Smilde; Edoardo Saccenti; Johan A. Westerhuis (CoRR, 2019)

Increased comparability between RNA-Seq and microarray data by utilization of gene sets. - Frans M. van der Kloet; Jeroen Buurmans; Martijs J. Jonker; Age K. Smilde; Johan A. Westerhuis (PLoS Comput. Biol., 2020)

Repeated measures ASCA+ for analysis of longitudinal intervention studies with multivariate outcome data. - Torfinn S. Madssen; Guro F. Giskeødegård; Age K. Smilde; Johan A. Westerhuis (PLoS Comput. Biol., 2021)

Analysis of high-dimensional metabolomics data with complex temporal dynamics using RM-ASCA+. - Balázs Erdos; Johan A. Westerhuis; Michiel E. Adriaens; Shauna D. O'Donovan; Ren Xie; Cécile M. Singh-Povel; Age K. Smilde; Ilja C. W. Arts (PLoS Comput. Biol., 2023)

GcDUO: an open-source software for GC × GC-MS data analysis. - Maria Llambrich; Frans M. van der Kloet; Lluc Sementé; Anaïs Rodrigues; Saer Samanipour; Pierre-Hugues Stefanuto; Johan A. Westerhuis; Raquel Cumeras; Jesús Brezmes (Briefings Bioinform., 2025)