uPy: A Ubiquitous CG Python API with Biological-Modeling Applications. - Ludovic Autin; Graham Johnson; Johan Hake; Arthur J. Olson; Michel F. Sanner (IEEE Computer Graphics and Applications, 2012)

A three-dimensional finite element model of human atrial anatomy: New methods for cubic Hermite meshes with extraordinary vertices. - Matthew J. Gonzales; Gregory M. Sturgeon; Adarsh Krishnamurthy; Johan Hake; René Jonas; Paul Stark; Wouter-Jan Rappel; Sanjiv M. Narayan; Yongjie Zhang 001; William Paul Segars; Andrew D. McCulloch (Medical Image Anal., 2013)

Patient-Specific Parameter Estimation for a Transversely Isotropic Active Strain Model of Left Ventricular Mechanics. - Sjur Gjerald; Johan Hake; Simone Pezzuto; Joakim Sundnes; Samuel T. Wall (STACOM, 2014)

Towards simulation of subcellular calcium dynamics at nanometre resolution. - Jun Chai; Johan Hake; Nan Wu 003; Mei Wen; Xing Cai; Glenn Terje Lines; Jing Yang; Huayou Su; Chunyuan Zhang; Xiangke Liao (Int. J. High Perform. Comput. Appl., 2015)

gotranx: General ODE translator. - Henrik Finsberg; Johan Hake (J. Open Source Softw., 2024)