Building and analysing genome-wide gene disruption networks. - Johan Rung; Thomas Schlitt; Alvis Brazma; K. Freivalds; Jaak Vilo (ECCB, 2002)

Graph Data Representation in Oracle Database 10g: Case Studies in Life Sciences. - Susie Stephens; Johan Rung; Xavier Lopez (IEEE Data Eng. Bull., 2004)

A System for Information Management in BioMedical Studies - SIMBioMS. - Maria Krestyaninova; Andris Zarins; Juris Viksna; Natalja Kurbatova; Peteris Rucevskis; Sudeshna Guha Neogi; Mike Gostev; Teemu Perheentupa; Juha Knuuttila; Amy Barrett; Ilkka Lappalainen; Johan Rung; et al. (Bioinform., 2009)

SAIL - a software system for sample and phenotype availability across biobanks and cohorts. - Mikhail Gostev; Julio Fernandez-Banet; Johan Rung; Joern Dietrich; Inga Prokopenko; Samuli Ripatti; Mark I. McCarthy; Alvis Brazma; Maria Krestyaninova (Bioinform., 2011)

Tools for mapping high-throughput sequencing data. - Nuno A. Fonseca; Johan Rung; Alvis Brazma; John C. Marioni (Bioinform., 2012)

Fully scalable online-preprocessing algorithm for short oligonucleotide microarray atlases - Leo Lahti; Aurora Torrente; Laura Elo; Alvis Brazma; Johan Rung (CoRR, 2012)

ArrayExpress update - trends in database growth and links to data analysis tools. - Gabriella Rustici; Nikolay Kolesnikov; Marco Brandizi; Tony Burdett; Miroslaw Dylag; Ibrahim Emam; Anna Farne; Emma Hastings; Jon C. Ison; Maria Keays; Natalja Kurbatova; James Malone; et al. (Nucleic Acids Res., 2013)

MuscleAtlasExplorer: a web service for studying gene expression in human skeletal muscle. - Olof Asplund; Johan Rung; Leif Groop; Rashmi Prasad B; Ola Hansson (Database J. Biol. Databases Curation, 2020)

Ten simple rules for annotating sequencing experiments. - Irene Stevens; Abdul Kadir Mukarram; Matthias Hörtenhuber; Terrence F. Meehan; Johan Rung; Carsten O. Daub (PLoS Comput. Biol., 2020)