ACID: a database for microarray clone information. - Markus Ringnér; Srinivas Veerla; Samuel Andersson; Johan Staaf; Jari Häkkinen (Bioinform., 2004)

Robust smooth segmentation approach for array CGH data analysis. - Jian Huang 005; Arief Gusnanto; Kathleen O'Sullivan; Johan Staaf; Åke Borg; Yudi Pawitan (Bioinform., 2007)

Continuous-index hidden Markov modelling of array CGH copy number data. - Susann Stjernqvist; Tobias Rydén; Martin Sköld; Johan Staaf (Bioinform., 2007)

Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios. - Johan Staaf; Johan Vallon-Christersson; David Lindgren; Gunnar Juliusson; Richard Rosenquist; Mattias Höglund; Åke Borg; Markus Ringnér (BMC Bioinform., 2008)

Performance of gene expression-based single sample predictors for assessment of clinicopathological subgroups and molecular subtypes in cancers: a case comparison study in non-small cell lung cancer. - Helena Cirenajwis; Martin Lauss; Maria Planck; Johan Vallon-Christersson; Johan Staaf (Briefings Bioinform., 2020)

Pan-cancer application of a lung-adenocarcinoma-derived gene-expression-based prognostic predictor. - Deborah F. Nacer; Helena Liljedahl; Anna Karlsson; David Lindgren; Johan Staaf (Briefings Bioinform., 2021)