Modelling cellular systems with PySCeS. - Brett G. Olivier; Johann M. Rohwer; Jan-Hendrik S. Hofmeyr (Bioinform., 2005)

The logic of kinetic regulation in the thioredoxin system. - Ché S. Pillay; Jan-Hendrik S. Hofmeyr; Johann M. Rohwer (BMC Syst. Biol., 2011)

Tracing regulatory routes in metabolism using generalised supply-demand analysis. - Carl D. Christensen; Jan-Hendrik S. Hofmeyr; Johann M. Rohwer (BMC Syst. Biol., 2015)

PySCeSToolbox: a collection of metabolic pathway analysis tools. - Carl D. Christensen; Jan-Hendrik S. Hofmeyr; Johann M. Rohwer (Bioinform., 2018)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (CoRR, 2022)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (Nucleic Acids Res., 2022)

50 years of Metabolic Control Analysis: Its past and current influence in the biological sciences. - David A. Fell; Emma Saavedra; Johann M. Rohwer (Biosyst., 2024)