Erosion Detection Yields More Plausible Phylogenetic Trees. - Georg Fuellen; Johann-Wolfgang Wägele (German Conference on Bioinformatics, 1999)

Minimum conflict: a divide-and-conquer approach to phylogeny estimation. - Georg Fuellen; Johann-Wolfgang Wägele; Robert Giegerich (Bioinform., 2001)

AliGROOVE - visualization of heterogeneous sequence divergence within multiple sequence alignments and detection of inflated branch support. - Patrick Kück; Sandra A. Meid; Christian Groß 006; Johann-Wolfgang Wägele; Bernhard Misof (BMC Bioinform., 2014)

Fine-grained Recognition Datasets for Biodiversity Analysis. - Erik Rodner; Marcel Simon; Gunnar Brehm; Stephanie Pietsch; Johann-Wolfgang Wägele; Joachim Denzler (CoRR, 2015)