Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays. - Johannes Eichner; Georg Zeller; Sascha Laubinger; Gunnar Rätsch (BMC Bioinform., 2011)

Qualitative translation of relations from BioPAX to SBML qual. - Finja Büchel; Clemens Wrzodek; Florian Mittag; Andreas Dräger; Johannes Eichner; Nicolas Rodriguez 001; Nicolas Le Novère; Andreas Zell (Bioinform., 2012)

Pathway-based visualization of cross-platform microarray datasets. - Clemens Wrzodek; Johannes Eichner; Andreas Zell (Bioinform., 2012)

InCroMAP: integrated analysis of cross-platform microarray and pathway data. - Clemens Wrzodek; Johannes Eichner; Finja Büchel; Andreas Zell (Bioinform., 2013)

RPPApipe: A pipeline for the analysis of reverse-phase protein array data. - Johannes Eichner; Yvonne Heubach; Manuel Ruff; Hella Kohlhof; Stefan Strobl; Barbara Mayer; Michael Pawlak; Markus F. Templin; Andreas Zell (Biosyst., 2014)

JSBML 1.0: providing a smorgasbord of options to encode systems biology models. - Nicolas Rodriguez 001; Alex Thomas; Leandro H. Watanabe; Ibrahim Y. Vazirabad; Victor Kofia; Harold F. Gómez; Florian Mittag; Jakob Matthes; Jan Rudolph; Finja Wrzodek; Eugen Netz; Alexander Diamantikos; et al. (Bioinform., 2015)

SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks. - Andreas Dräger; Daniel C. Zielinski; Roland Keller; Matthias Rall; Johannes Eichner; Bernhard O. Palsson; Andreas Zell (BMC Syst. Biol., 2015)

Machine learning and statistical methods for preclinical omics data analysis. - Johannes Eichner (Verlag Dr. Hut, 2015)