Qualitative Simulation of Genetic Regulatory Networks: Method and Application. - Hidde de Jong; Michel Page; Céline Hernandez; Johannes Geiselmann (IJCAI, 2001)

Dealing with Discontinuities in the Qualitative Simulation of Genetic Regulatory Networks. - Hidde de Jong; Jean-Luc Gouzé; Céline Hernandez; Michel Page; Sari Tewfik; Johannes Geiselmann (ECAI, 2002)

Hybrid Modeling and Simulation of Genetic Regulatory Networks: A Qualitative Approach. - Hidde de Jong; Jean-Luc Gouzé; Céline Hernandez; Michel Page; Sari Tewfik; Johannes Geiselmann (HSCC, 2003)

Genetic Network Analyzer: qualitative simulation of genetic regulatory networks. - Hidde de Jong; Johannes Geiselmann; Céline Hernandez; Michel Page (Bioinform., 2003)

Qualitative Analysis and Verification of Hybrid Models of Genetic Regulatory Networks: Nutritional Stress Response in. - Grégory Batt; Delphine Ropers; Hidde de Jong; Johannes Geiselmann; Michel Page; Dominique Schneider (HSCC, 2005)

Analysis and Verification of Qualitative Models of Genetic Regulatory Networks: A Model-Checking Approach. - Grégory Batt; Delphine Ropers; Hidde de Jong; Johannes Geiselmann; Radu Mateescu 001; Michel Page; Dominique Schneider (IJCAI, 2005)

Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli. - Grégory Batt; Delphine Ropers; Hidde de Jong; Johannes Geiselmann; Radu Mateescu 001; Michel Page; Dominique Schneider (ISMB (Supplement of Bioinformatics), 2005)

Analyse qualitative de la dynamique de réseaux de régulation génique par des modèles linéaires par morceaux. - Grégory Batt; Hidde de Jong; Johannes Geiselmann; Jean-Luc Gouzé; Michel Page; Delphine Ropers; Sari Tewfik; Dominique Schneider (Tech. Sci. Informatiques, 2007)

Symbolic reachability analysis of genetic regulatory networks using discrete abstractions. - Grégory Batt; Hidde de Jong; Michel Page; Johannes Geiselmann (Autom., 2008)

WellReader: a MATLAB program for the analysis of fluorescence and luminescence reporter gene data. - Frédéric Boyer; Bruno Besson; Guillaume Baptist; Jérôme Izard; Corinne Pinel; Delphine Ropers; Johannes Geiselmann; Hidde de Jong (Bioinform., 2010)

Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria. - Hidde de Jong; Caroline Ranquet; Delphine Ropers; Corinne Pinel; Johannes Geiselmann (BMC Syst. Biol., 2010)

The Carbon Assimilation Network in Escherichia coli Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes. - Valentina Baldazzi; Delphine Ropers; Yves Markowicz; Daniel Kahn; Johannes Geiselmann; Hidde de Jong (PLoS Comput. Biol., 2010)

Fluorescent Reporter Genes and the Analysis of Bacterial Regulatory Networks. - Hidde de Jong; Johannes Geiselmann (HSB, 2014)

Robust reconstruction of gene expression profiles from reporter gene data using linear inversion. - Valentin Zulkower; Michel Page; Delphine Ropers; Johannes Geiselmann; Hidde de Jong (Bioinform., 2015)

Inference of Quantitative Models of Bacterial Promoters from Time-Series Reporter Gene Data. - Diana Stefan; Corinne Pinel; Stéphane Pinhal; Eugenio Cinquemani; Johannes Geiselmann; Hidde de Jong (PLoS Comput. Biol., 2015)

Dynamical Allocation of Cellular Resources as an Optimal Control Problem: Novel Insights into Microbial Growth Strategies. - Nils Giordano; Francis Mairet; Jean-Luc Gouzé; Johannes Geiselmann; Hidde de Jong (PLoS Comput. Biol., 2016)

An ensemble of mathematical models showing diauxic growth behaviour. - Andreas Kremling; Johannes Geiselmann; Delphine Ropers; Hidde de Jong (BMC Syst. Biol., 2018)