The Proteomics Identifications (PRIDE) database and associated tools: status in 2013. - Juan Antonio Vizcaíno; Richard G. Côté; Attila Csordas; José A. Dianes; Antonio Fabregat; Joseph M. Foster; Johannes Griss; Emanuele Alpi; Melih Birim; Javier Contell; Gavin O'Kelly; Andreas Schoenegger; et al. (Nucleic Acids Res., 2013)

2016 update of the PRIDE database and its related tools. - Juan Antonio Vizcaíno; Attila Csordas; Noemi del-Toro; José A. Dianes; Johannes Griss; Ilias Lavidas; Gerhard Mayer; Yasset Pérez-Riverol; Florian Reisinger; Tobias Ternent; Qing-Wei Xu; Rui Wang; et al. (Nucleic Acids Res., 2016)

BioContainers: an open-source and community-driven framework for software standardization. - Felipe da Veiga Leprevost; Björn A. Grüning; Saulo Aflitos; Hannes L. Röst; Julian Uszkoreit; Harald Barsnes; Marc Vaudel; Pablo A. Moreno; Laurent Gatto; Jonas Weber; Mingze Bai; Rafael C. Jiménez; et al. (Bioinform., 2017)

The PRIDE database and related tools and resources in 2019: improving support for quantification data. - Yasset Pérez-Riverol; Attila Csordas; Jingwen Bai 003; Manuel Bernal Llinares; Suresh Hewapathirana; Deepti Jaiswal Kundu; Avinash Inuganti; Johannes Griss; Gerhard Mayer; Martin Eisenacher; Enrique Pérez; Julian Uszkoreit; et al. (Nucleic Acids Res., 2019)

scAnnotatR: framework to accurately classify cell types in single-cell RNA-sequencing data. - Vy Nguyen; Johannes Griss (BMC Bioinform., 2022)

The reactome pathway knowledgebase 2022. - Marc Gillespie; Bijay Jassal; Ralf Stephan; Marija Milacic; Karen Rothfels; Andrea Senff-Ribeiro; Johannes Griss; Cristoffer Sevilla; Lisa Matthews; Chuqiao Gong; Chuan Deng; Thawfeek M. Varusai; et al. (Nucleic Acids Res., 2022)