Cellular oscillators in animal segmentation. - Johannes Jaeger; Brian C. Goodwin (Silico Biol., 2002)

Reverse Engineering the Gap Gene Network of Drosophila melanogaster. - Theodore J. Perkins; Johannes Jaeger; John Reinitz; Leon Glass (PLoS Comput. Biol., 2006)

Parameter estimation and determinability analysis applied to Drosophila gap gene circuits. - Maksat Ashyraliyev; Johannes Jaeger; Joke G. Blom (BMC Syst. Biol., 2008)

Gene Circuit Analysis of the Terminal Gap Gene huckebein. - Maksat Ashyraliyev; Ken Siggens; Hilde Janssens; Joke G. Blom; Michael Akam; Johannes Jaeger (PLoS Comput. Biol., 2009)

Reverse Engineering of Gene Regulatory Networks. - Johannes Jaeger; Nicholas A. M. Monk (Learning and Inference in Computational Systems Biology, 2010)

Reverse engineering a gene network using an asynchronous parallel evolution strategy. - Luke Jostins; Johannes Jaeger (BMC Syst. Biol., 2010)

Efficient Reverse-Engineering of a Developmental Gene Regulatory Network. - Anton Crombach; Karl R. Wotton; Damjan Cicin-Sain; Maksat Ashyraliyev; Johannes Jaeger (PLoS Comput. Biol., 2012)

Reverse-Engineering Post-Transcriptional Regulation of Gap Genes in Drosophila melanogaster. - Kolja Becker; Eva Balsa-Canto; Damjan Cicin-Sain; Astrid Hoermann; Hilde Janssens; Julio R. Banga; Johannes Jaeger (PLoS Comput. Biol., 2013)

Evolution of early development in dipterans: Reverse-engineering the gap gene network in the moth midge Clogmia albipunctata (Psychodidae). - Anton Crombach; Mónica A. García-Solache; Johannes Jaeger (Biosyst., 2014)

Classification of transient behaviours in a time-dependent toggle switch model. - Berta Verd; Anton Crombach; Johannes Jaeger (BMC Syst. Biol., 2014)

BioPreDyn-bench: benchmark problems for kinetic modelling in systems biology. - Alejandro Fernández Villaverde; David Henriques; Kieran Smallbone; Sophia Bongard; Joachim Schmid 004; Damjan Cicin-Sain; Anton Crombach; Julio Saez-Rodriguez; Klaus Mauch; Eva Balsa-Canto; Pedro Mendes 001; Johannes Jaeger; et al. (CoRR, 2014)

BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology. - Alejandro Fernández Villaverde; David Henriques; Kieran Smallbone; Sophia Bongard; Joachim Schmid 004; Damjan Cicin-Sain; Anton Crombach; Julio Saez-Rodriguez; Klaus Mauch; Eva Balsa-Canto; Pedro Mendes 001; Johannes Jaeger; et al. (BMC Syst. Biol., 2015)

SuperFly: a comparative database for quantified spatio-temporal gene expression patterns in early dipteran embryos. - Damjan Cicin-Sain; Antonio Hermoso Pulido; Anton Crombach; Karl R. Wotton; Eva Jiménez-Guri; Jean-François Taly; Guglielmo Roma; Johannes Jaeger (Nucleic Acids Res., 2015)

Dynamic Maternal Gradients Control Timing and Shift-Rates for Drosophila Gap Gene Expression. - Berta Verd; Anton Crombach; Johannes Jaeger (PLoS Comput. Biol., 2017)

Artificial intelligence is algorithmic mimicry: why artificial "agents" are not (and won't be) proper agents. - Johannes Jaeger (CoRR, 2023)