Fast differentiable DNA and protein sequence optimization for molecular design. - Johannes Linder; Georg Seelig (CoRR, 2020)

Robust Digital Molecular Design of Binarized Neural Networks. - Johannes Linder; Yuan-Jyue Chen; David Wong; Georg Seelig; Luis Ceze; Karin Strauss (DNA, 2021)

Fast activation maximization for molecular sequence design. - Johannes Linder; Georg Seelig (BMC Bioinform., 2021)

Predicting, Engineering and Interpreting Gene Regulatory Sequences and Proteins with Deep Learning. - Johannes Linder (2021)

Interpreting neural networks for biological sequences by learning stochastic masks. - Johannes Linder; Alyssa La Fleur; Zibo Chen; Ajasja Ljubetic; David Baker 001; Sreeram Kannan; Georg Seelig (Nat. Mach. Intell., 2022)