ILoReg: a tool for high-resolution cell population identification from single-cell RNA-seq data. - Johannes Smolander; Sini Junttila; Mikko S. Venäläinen; Laura L. Elo (Bioinform., 2021)

Benchmarking methods for detecting differential states between conditions from multi-subject single-cell RNA-seq data. - Sini Junttila; Johannes Smolander; Laura L. Elo (Briefings Bioinform., 2022)

scShaper: an ensemble method for fast and accurate linear trajectory inference from single-cell RNA-seq data. - Johannes Smolander; Sini Junttila; Mikko S. Venäläinen; Laura L. Elo (Bioinform., 2022)

Cell-connectivity-guided trajectory inference from single-cell data. - Johannes Smolander; Sini Junttila; Laura L. Elo (Bioinform., 2023)