A multiple geometric deformable model framework for homeomorphic 3D medical image segmentation. - Xian Fan; Pierre-Louis Bazin; John A. Bogovic; Ying Bai; Jerry L. Prince (CVPR Workshops, 2008)

Automatically identifying white matter tracts using cortical labels. - John A. Bogovic; Aaron Carass; Jing Wan; Bennett A. Landman; Jerry L. Prince (ISBI, 2008)

Belief Propagation Based Segmentation of White Matter Tracts in DTI. - Pierre-Louis Bazin; John A. Bogovic; Daniel S. Reich; Jerry L. Prince; Dzung L. Pham (MICCAI (1), 2009)

Topology-preserving STAPLE. - John A. Bogovic; Pierre-Louis Bazin; Jerry L. Prince (CVPR Workshops, 2010)

A novel contrast for DTI visualization for thalamus delineation. - Xian Fan; Meredith Thompson; John A. Bogovic; Pierre-Louis Bazin; Jerry L. Prince (Image-Guided Procedures, 2010)

Statistical fusion of surface labels provided by multiple raters. - John A. Bogovic; Bennett A. Landman; Pierre-Louis Bazin; Jerry L. Prince (Image Processing, 2010)

Simultaneous truth and performance level estimation with incomplete, over-complete, and ancillary data. - Bennett A. Landman; John A. Bogovic; Jerry L. Prince (Image Processing, 2010)

Resolution of crossing fibers with constrained compressed sensing using traditional diffusion tensor MRI. - Bennett A. Landman; Hanlin Wan; John A. Bogovic; Pierre-Louis Bazin; Jerry L. Prince (Image Processing, 2010)

The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software. - Blake C. Lucas; John A. Bogovic; Aaron Carass; Pierre-Louis Bazin; Jerry L. Prince; Dzung L. Pham; Bennett A. Landman (Neuroinformatics, 2010)

Erratum to: The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software. - Blake C. Lucas; John A. Bogovic; Aaron Carass; Pierre-Louis Bazin; Jerry L. Prince; Dzung L. Pham; Bennett A. Landman (Neuroinformatics, 2010)

Distance transforms in multi channel MR image registration. - Min Chen 006; Aaron Carass; John A. Bogovic; Pierre-Louis Bazin; Jerry L. Prince (Image Processing, 2011)

Direct segmentation of the major white matter tracts in diffusion tensor images. - Pierre-Louis Bazin; Chuyang Ye; John A. Bogovic; Navid Shiee; Daniel S. Reich; Jerry L. Prince; Dzung L. Pham (NeuroImage, 2011)

Multi-parametric neuroimaging reproducibility: A 3-T resource study. - Bennett A. Landman; Alan J. Huang; Aliya Gifford; Deepti S. Vikram; Issel Anne L. Lim; Jonathan A. D. Farrell; John A. Bogovic; Jun Hua; Min Chen 006; Samson Jarso; Seth A. Smith; Suresh Joel; et al. (NeuroImage, 2011)

Fully automatic segmentation of the dentate nucleus using diffusion weighted images. - Chuyang Ye; John A. Bogovic; Pierre-Louis Bazin; Jerry L. Prince; Sarah H. Ying (ISBI, 2012)

Labeling of the cerebellar peduncles using a supervised Gaussian classifier with volumetric tract segmentation. - Chuyang Ye; Pierre-Louis Bazin; John A. Bogovic; Sarah H. Ying; Jerry L. Prince (Image Processing, 2012)

Foibles, follies, and fusion: Web-based collaboration for medical image labeling. - Bennett A. Landman; Andrew J. Asman; Andrew G. Scoggins; John A. Bogovic; Joshua A. Stein; Jerry L. Prince (NeuroImage, 2012)

Resolution of crossing fibers with constrained compressed sensing using diffusion tensor MRI. - Bennett A. Landman; John A. Bogovic; Hanlin Wan; Fatma El Zahraa ElShahaby; Pierre-Louis Bazin; Jerry L. Prince (NeuroImage, 2012)

Robust Statistical Fusion of Image Labels. - Bennett A. Landman; Andrew J. Asman; Andrew G. Scoggins; John A. Bogovic; Fangxu Xing; Jerry L. Prince (IEEE Trans. Medical Imaging, 2012)

Automated Segmentation of the Cerebellar Lobules Using Boundary Specific Classification and Evolution. - John A. Bogovic; Pierre-Louis Bazin; Sarah H. Ying; Jerry L. Prince (IPMI, 2013)

Segmentation of the complete superior cerebellar peduncles using a multi-object geometric deformable model. - Chuyang Ye; John A. Bogovic; Sarah H. Ying; Jerry L. Prince (ISBI, 2013)

Automatic cell segmentation in fluorescence images of confluent cell monolayers using multi-object geometric deformable model. - Zhen Yang 002; John A. Bogovic; Aaron Carass; Mao Ye; Peter C. Searson; Jerry L. Prince (Image Processing, 2013)

Parcellation of the thalamus using diffusion tensor images and a multi-object geometric deformable model. - Chuyang Ye; John A. Bogovic; Sarah H. Ying; Jerry L. Prince (Image Processing, 2013)

A multiple object geometric deformable model for image segmentation. - John A. Bogovic; Jerry L. Prince; Pierre-Louis Bazin (Comput. Vis. Image Underst., 2013)

Approaching expert results using a hierarchical cerebellum parcellation protocol for multiple inexpert human raters. - John A. Bogovic; Bruno M. Jedynak; Rachel Rigg; Annie Du; Bennett A. Landman; Jerry L. Prince; Sarah H. Ying (NeuroImage, 2013)

System for Integrated Neuroimaging Analysis and Processing of Structure. - Bennett A. Landman; John A. Bogovic; Aaron Carass; Min Chen 006; Snehashis Roy; Navid Shiee; Zhen Yang 002; Bhaskar Kishore; Dzung L. Pham; Pierre-Louis Bazin; Susan M. Resnick; Jerry L. Prince (Neuroinformatics, 2013)

Learned versus Hand-Designed Feature Representations for 3d Agglomeration. - John A. Bogovic; Gary B. Huang; Viren Jain (ICLR, 2014)

Post-acquisition image based compensation for thickness variation in microscopy section series. - Philipp Hanslovsky; John A. Bogovic; Stephan Saalfeld (ISBI, 2015)

Image based compensation for thickness variation in microscopy section series. - Philipp Hanslovsky; John A. Bogovic; C. Shan Xu; Kenneth J. Hayworth; Zhiyuan Lu; Harald F. Hess; Stephan Saalfeld (CoRR, 2015)

Robust registration of calcium images by learned contrast synthesis. - John A. Bogovic; Philipp Hanslovsky; Allan Wong; Stephan Saalfeld (ISBI, 2016)

Automated cerebellar lobule segmentation with application to cerebellar structural analysis in cerebellar disease. - Zhen Yang 002; Chuyang Ye; John A. Bogovic; Aaron Carass; Bruno M. Jedynak; Sarah H. Ying; Jerry L. Prince (NeuroImage, 2016)

Deep Learning for Isotropic Super-Resolution from Non-isotropic 3D Electron Microscopy. - Larissa Heinrich; John A. Bogovic; Stephan Saalfeld (MICCAI (2), 2017)

Image-based correction of continuous and discontinuous non-planar axial distortion in serial section microscopy. - Philipp Hanslovsky; John A. Bogovic; Stephan Saalfeld (Bioinform., 2017)

Decomposing heterogeneous dynamical systems with graph neural networks. - Cédric Allier; Magdalena C. Schneider; Michael Innerberger; Larissa Heinrich; John A. Bogovic; Stephan Saalfeld (CoRR, 2024)