Spatially-resolved metabolic cooperativity within dense bacterial colonies. - John A. Cole; Lars Kohler; Jamila Hedhli; Zaida Luthey-Schulten (BMC Syst. Biol., 2015)

Population FBA predicts metabolic phenotypes in yeast. - Piyush Labhsetwar; Marcelo C. R. Melo; John A. Cole; Zaida Luthey-Schulten (PLoS Comput. Biol., 2017)

Next generation immuno-oncology tumor profiling using a rapid, non-invasive, computational biophysics biomarker in early-stage breast cancer. - Daniel Cook; Matthew Biancalana; Nicole Liadis; Dorys Lopez Ramos; Yuhan Zhang; Snehal Patel; Joseph R. Peterson; John R. Pfeiffer; John A. Cole; Anuja K. Antony (Frontiers Artif. Intell., 2023)