Experimental Design and the Relative Sensitivity of BOLD and Perfusion fMRI. - Geoffrey Karl Aguirre; John A. Detre; Eric Zarahn; David C. Alsop (NeuroImage, 2002)

Age-Related Changes in Working Memory during Sentence Comprehension: An fMRI Study. - Murray Grossman; Ayanna Cooke; Christian Devita; David C. Alsop; John A. Detre; Willis Chen; James C. Gee (NeuroImage, 2002)

The Neural Basis for Category-Specific Knowledge: An fMRI Study. - Murray Grossman; Phyllis Koenig; Christian Devita; Guila Glosser; David C. Alsop; John A. Detre; James C. Gee (NeuroImage, 2002)

Temporal Dynamics of Brain Tissue Nitric Oxide during Functional Forepaw Stimulation in Rats. - Donald G. Buerk; Beau M. Ances; Joel H. Greenberg; John A. Detre (NeuroImage, 2003)

Empirical analyses of null-hypothesis perfusion FMRI data at 1.5 and 4 T. - Jiongjiong Wang; Geoffrey Karl Aguirre; Daniel Y. Kimberg; John A. Detre (NeuroImage, 2003)

Concurrent CBF and CMRGlc changes during human brain activation by combined fMRI-PET scanning. - Andrew B. Newberg; Jiongjiong Wang; Hengyi Rao; Randel L. Swanson; Nancy A. Wintering; Joel S. Karp; Abass Alavi; Joel H. Greenberg; John A. Detre (NeuroImage, 2005)

Boost up the detection sensitivity of ASL perfusion fMRI through support vector machine. - Ze Wang 017; Anna Rose Childress; John A. Detre (EMBC, 2006)

Hippocampus-Specific fMRI Group Activation Analysis with Continuous M-Reps. - Paul A. Yushkevich; John A. Detre; Kathy Z. Tang; Angela Hoang; Dawn Mechanic-Hamilton; María A. Fernández-Seara; Marc Korczykowski; Hui Zhang 005; James C. Gee (MICCAI (2), 2006)

Continuous ASL perfusion fMRI investigation of higher cognition: Quantification of tonic CBF changes during sustained attention and working memory tasks. - Junghoon Kim 006; John Whyte; Jiongjiong Wang; Hengyi Rao; Kathy Z. Tang; John A. Detre (NeuroImage, 2006)

Non-Uniform Smoothing in Hippocampus-Specific Group Fmri Analysis. - Paul A. Yushkevich; John A. Detre; James C. Gee (ISBI, 2007)

Support vector machine learning-based fMRI data group analysis. - Ze Wang 017; Anna Rose Childress; Jiongjiong Wang; John A. Detre (NeuroImage, 2007)

Hippocampus-specific fMRI group activation analysis using the continuous medial representation. - Paul A. Yushkevich; John A. Detre; Dawn Mechanic-Hamilton; María A. Fernández-Seara; Kathy Z. Tang; Angela Hoang; Marc Korczykowski; Hui Zhang 005; James C. Gee (NeuroImage, 2007)

Spatial correspondence based asymmetry analysis in FMRI. - Sandhitsu R. Das; Dawn Mechanic-Hamilton; Marc Korczykowski; Brian B. Avants; John A. Detre; James C. Gee; Paul A. Yushkevich (ISBI, 2008)

Building an atlas of hippocampal subfields using postmortem MRI. - Paul A. Yushkevich; Brian B. Avants; John Pluta; David Minkoff; Stephen Pickup; Weixia Liu; John A. Detre; Murray Grossman; James C. Gee (ISBI, 2008)

Shape-Based Alignment of Hippocampal Subfields: Evaluation in Postmortem MRI. - Paul A. Yushkevich; Brian B. Avants; John Pluta; David Minkoff; John A. Detre; Murray Grossman; James C. Gee (MICCAI (1), 2008)

Structural consequences of diffuse traumatic brain injury: A large deformation tensor-based morphometry study. - Junghoon Kim 006; Brian B. Avants; Sunil Patel; John Whyte; H. Branch Coslett; John Pluta; John A. Detre; James C. Gee (NeuroImage, 2008)

Neural correlates of voluntary and involuntary risk taking in the human brain: An fMRI Study of the Balloon Analog Risk Task (BART). - Hengyi Rao; Marc Korczykowski; John Pluta; Angela Hoang; John A. Detre (NeuroImage, 2008)

Narrative speech production: An fMRI study using continuous arterial spin labeling. - Vanessa Troiani; María A. Fernández-Seara; Ze Wang 017; John A. Detre; Sherry Ash; Murray Grossman (NeuroImage, 2008)

Assessment of functional development in normal infant brain using arterial spin labeled perfusion MRI. - Ze Wang 017; María A. Fernández-Seara; David C. Alsop; Wen-Ching Liu; Judy Flax; April A. Benasich; John A. Detre (NeuroImage, 2008)

Function lateralization via measuring coherence laterality. - Ze Wang 017; Dawn Mechanic-Hamilton; John Pluta; Simon Glynn; John A. Detre (NeuroImage, 2009)

A high-resolution computational atlas of the human hippocampus from postmortem magnetic resonance imaging at 9.4 T. - Paul A. Yushkevich; Brian B. Avants; John Pluta; Sandhitsu R. Das; David Minkoff; Dawn Mechanic-Hamilton; Simon Glynn; Stephen Pickup; Weixia Liu; James C. Gee; Murray Grossman; John A. Detre (NeuroImage, 2009)

Physiological Modulations in Arterial Spin Labeling Perfusion Magnetic Resonance Imaging. - Wen-Chau Wu; Brian L. Edlow; Mark A. Elliott; Jiongjiong Wang; John A. Detre (IEEE Trans. Medical Imaging, 2009)

The optimal template effect in hippocampus studies of diseased populations. - Brian B. Avants; Paul A. Yushkevich; John Pluta; David Minkoff; Marc Korczykowski; John A. Detre; James C. Gee (NeuroImage, 2010)

Imaging brain fatigue from sustained mental workload: An ASL perfusion study of the time-on-task effect. - Julian Lim; Wen-Chau Wu; Jiongjiong Wang; John A. Detre; David F. Dinges; Hengyi Rao (NeuroImage, 2010)

Early parental care is important for hippocampal maturation: Evidence from brain morphology in humans. - Hengyi Rao; Laura M. Betancourt; Joan M. Giannetta; Nancy L. Brodsky; Marc Korczykowski; Brian B. Avants; James C. Gee; Jiongjiong Wang; Hallam Hurt; John A. Detre; Martha J. Farah (NeuroImage, 2010)

Heterogeneity of functional activation during memory encoding across hippocampal subfields in temporal lobe epilepsy. - Sandhitsu R. Das; Dawn Mechanic-Hamilton; John Pluta; Marc Korczykowski; John A. Detre; Paul A. Yushkevich (NeuroImage, 2011)

Improving fMRI activation detection sensitivity using intervoxel coherence mapping. - Ze Wang 017; Zhengjun Li; John Pluta; John A. Detre (Int. J. Imaging Syst. Technol., 2012)

The development and future of perfusion fMRI for dynamic imaging of human brain activity. - Geoffrey Karl Aguirre; John A. Detre (NeuroImage, 2012)

Fusing Functional Signals by Sparse Canonical Correlation Analysis Improves Network Reproducibility. - Jeffrey T. Duda; John A. Detre; Junghoon Kim 006; James C. Gee; Brian B. Avants (MICCAI (3), 2013)

Direct visualization of short transverse relaxation time component (ViSTa). - Se-Hong Oh 001; Michel Bilello; Matthew Schindler; Clyde E. Markowitz; John A. Detre; Jongho Lee 003 (NeuroImage, 2013)

Comparison of 2D and 3D single-shot ASL perfusion fMRI sequences. - Marta Vidorreta; Ze Wang 017; Ignacio Rodríguez; María A. Pastor; John A. Detre; María A. Fernández-Seara (NeuroImage, 2013)

In vivo measurement of glutamate loss is associated with synapse loss in a mouse model of tauopathy. - Rachelle Crescenzi; Catherine Debrosse; Ravi Prakash Reddy Nanga; Sanjana Reddy; Mohammad Haris; Hari Hariharan; Michiyo Iba; Virginia M. Y. Lee; John A. Detre; Arijitt Borthakur; Ravinder Reddy (NeuroImage, 2014)

Decomposing cerebral blood flow MRI into functional and structural components: A non-local approach based on prediction. - Benjamin M. Kandel; Danny J. J. Wang; John A. Detre; James C. Gee; Brian B. Avants (NeuroImage, 2015)

A framework for informing segmentation of in vivo MRI with information derived from ex vivo imaging: Application in the medial temporal lobe. - Paul A. Yushkevich; Laura E. M. Wisse; Daniel H. Adler; Ranjit Ittyerah; John Pluta; John L. Robinson; Theresa Schuck; John Q. Trojanowski; Murray Grossman; John A. Detre; Mark A. Elliott; Jon B. Toledo; et al. (EMBC, 2016)

An actively decoupled dual transceiver coil system for continuous ASL at 7 T. - Randall B. Stafford; Myung Kyun Woo; Se-Hong Oh 001; Sudipto Dolui; Tiejun Zhao; Young-Bo Kim; John A. Detre; Zang-Hee Cho; Jongho Lee 003 (Int. J. Imaging Syst. Technol., 2016)

Heterogeneous increases of regional cerebral blood flow during preterm brain development: Preliminary assessment with pseudo-continuous arterial spin labeled perfusion MRI. - Minhui Ouyang; Peiying Liu; Tina Jeon; Lina Chalak; Roy Heyne; Nancy K. Rollins; Daniel J. Licht; John A. Detre; Timothy P. L. Roberts; Hanzhang Lu; Hao Huang 016 (NeuroImage, 2017)

Effects of resting state condition on reliability, trait specificity, and network connectivity of brain function measured with arterial spin labeled perfusion MRI. - Zhengjun Li; Marta Vidorreta; Natalie Katchmar; David C. Alsop; Daniel H. Wolf; John A. Detre (NeuroImage, 2018)

Characterizing the human hippocampus in aging and Alzheimer's disease using a computational atlas derived from ex vivo MRI and histology. - Daniel H. Adler; Laura E. M. Wisse; Ranjit Ittyerah; John Pluta; Song-Lin Ding; Long Xie; Jiancong Wang; Salmon Kadivar; John L. Robinson; Theresa Schuck; John Q. Trojanowski; Murray Grossman; et al. (Proc. Natl. Acad. Sci. USA, 2018)

Machine learning in cardiovascular flows modeling: Predicting pulse wave propagation from non-invasive clinical measurements using physics-informed deep learning. - Georgios Kissas; Yibo Yang; Eileen Hwuang; Walter R. Witschey; John A. Detre; Paris Perdikaris (CoRR, 2019)

Test-retest reliability of cerebral blood flow for assessing brain function at rest and during a vigilance task. - Fan Nils Yang; Sihua Xu; Andrea M. Spaeth; Olga Galli; Ke Zhao; Zhuo Fang; Mathias Basner; David F. Dinges; John A. Detre; Hengyi Rao (NeuroImage, 2019)

Building an Ex Vivo Atlas of the Earliest Brain Regions Affected by Alzheimer's Disease Pathology. - Sadhana Ravikumar; Laura E. M. Wisse; Ranjit Ittyerah; Sydney Lim; Madigan Lavery; Long Xie; John L. Robinson; Theresa Schuck; Murray Grossman; Edward B. Lee; M. Dylan Tisdall; Karthik Prabhakaran; et al. (ISBI, 2020)

Rotated spiral RARE for high spatial and temporal resolution volumetric arterial spin labeling acquisition. - Fanny Munsch; Manuel Taso; Li Zhao 001; R. Marc Lebel; Arnaud Guidon; John A. Detre; David C. Alsop (NeuroImage, 2020)

Unfolding the Medial Temporal Lobe Cortex to Characterize Neurodegeneration Due to Alzheimer's Disease Pathology Using Ex vivo Imaging. - Sadhana Ravikumar; Laura E. M. Wisse; Sydney Lim; David J. Irwin; Ranjit Ittyerah; Long Xie; Sandhitsu R. Das; Edward B. Lee; M. Dylan Tisdall; Karthik Prabhakaran; John A. Detre; Gabor Mizsei; et al. (MLCN@MICCAI, 2021)

FlywheelTools: Data Curation and Manipulation on the Flywheel Platform. - Tinashe M. Tapera; Matthew Cieslak; Max Bertolero; Azeez Adebimpe; Geoffrey Karl Aguirre; Ellyn R. Butler; Philip A. Cook; Diego Davila; Mark A. Elliott; Sophia Linguiti; Kristin Murtha; William Tackett; et al. (Frontiers Neuroinformatics, 2021)

Integrating 1H MRS and deuterium labeled glucose for mapping the dynamics of neural metabolism in humans. - Abigail T. J. Cember; Neil E. Wilson; Laurie J. Rich; Puneet Bagga; Ravi Prakash Reddy Nanga; Sophia Swago; Anshuman Swain; Deepa Thakuri; Mark Elliot; Mitchell D. Schnall; John A. Detre; Ravinder Reddy (NeuroImage, 2022)

Cerebellum anatomy predicts individual risk-taking behavior and risk tolerance. - Peng Quan; Lisheng He; Tianxin Mao; Zhuo Fang; Yao Deng; Yu Pan; Xiaocui Zhang; Ke Zhao; Hui Lei; John A. Detre; Joseph W. Kable; Hengyi Rao (NeuroImage, 2022)

Spatially-enhanced clusterwise inference for testing and localizing intermodal correspondence. - Sara Weinstein; Simon N. Vandekar; Erica B. Baller; Danni Tu; Azeez Adebimpe; Tinashe M. Tapera; Ruben C. Gur; Raquel E. Gur; John A. Detre; Armin Raznahan; Aaron Alexander-Bloch; Theodore D. Satterthwaite; et al. (NeuroImage, 2022)

Improved Segmentation of Deep Sulci in Cortical Gray Matter Using a Deep Learning Framework Incorporating Laplace's Equation. - Sadhana Ravikumar; Ranjit Ittyerah; Sydney Lim; Long Xie; Sandhitsu R. Das; Pulkit Khandelwal; Laura E. M. Wisse; Madigan L. Bedard; John L. Robinson; Terry Schuck; Murray Grossman; John Q. Trojanowski; et al. (IPMI, 2023)

Automated deep learning segmentation of high-resolution 7 T ex vivo MRI for quantitative analysis of structure-pathology correlations in neurodegenerative diseases. - Pulkit Khandelwal; Michael Tran Duong; Shokufeh Sadaghiani; Sydney Lim; Amanda Denning; Eunice Chung; Sadhana Ravikumar; Sanaz Arezoumandan; Claire Peterson; Madigan L. Bedard; Noah Capp; Ranjit Ittyerah; et al. (CoRR, 2023)

bids-specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2023)

Multi Echo-Time ASL MRI Denoising via Joint Complex Low-Rank Regularization. - Hangfan Liu; Bo Li; Yiran Li; Manuel Taso; John A. Detre; Ze Wang 017 (EMBC, 2024)

Adaptive Joint Data Selection for Sparsity Based Arterial Spin Labeling MRI Denoising. - Hangfan Liu; Bo Li; Yiran Li; John A. Detre; Ze Wang 017 (ISBI, 2024)

Surface-Based Parcellation and Vertex-wise Analysis of Ultra High-resolution ex vivo 7 tesla MRI in Alzheimer's disease and related dementias. - Pulkit Khandelwal; Michael Tran Duong; Lisa Levorse; Constanza Fuentes; Amanda Denning; Winifred Trotman; Ranjit Ittyerah; Alejandra Bahena; Theresa Schuck; Marianna Gabrielyan; Karthik Prabhakaran; Daniel T. Ohm; et al. (MLCN@MICCAI, 2024)

Surface-based parcellation and vertex-wise analysis of ultra high-resolution ex vivo 7 tesla MRI in neurodegenerative diseases. - Pulkit Khandelwal; Michael Tran Duong; Constanza Fuentes; Amanda Denning; Winifred Trotman; Ranjit Ittyerah; Alejandra Bahena; Theresa Schuck; Marianna Gabrielyan; Karthik Prabhakaran; Daniel T. Ohm; Gabor Mizsei; et al. (CoRR, 2024)

The Brain Imaging Data Structure (BIDS) Specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2024)