Genetic Algorithms and Simulated Annealing for Gene Mapping. - John A. Gunnels; Paul Cull; James L. Holloway (International Conference on Evolutionary Computation, 1994)

PLAPACK: Parallel Linear Algebra Package. - Phillip Alpatov; Gregory S. Baker; H. Carter Edwards; John A. Gunnels; Greg Morrow; James Overfelt; Robert A. van de Geijn; Yuan-Jye J. Wu (PP, 1997)

PLAPACK Parallel Linear Algebra Package Design Overview. - Phillip Alpatov; Gregory S. Baker; H. Carter Edwards; John A. Gunnels; Greg Morrow; James Overfelt; Robert A. van de Geijn (SC, 1997)

Parallel implementation of BLAS: general techniques for Level 3 BLAS. - Almadena Yu. Chtchelkanova; John A. Gunnels; Greg Morrow; James Overfelt; Robert A. van de Geijn (Concurr. Pract. Exp., 1997)

PLAPACK: High Performance through High-Level Abstraction. - Gregory S. Baker; John A. Gunnels; Greg Morrow; Beatrice Riviere; Robert A. van de Geijn (ICPP, 1998)

A Flexible Class of Parallel Matrix Multiplication Algorithms. - John A. Gunnels; Calvin Lin; Greg Morrow; Robert A. van de Geijn (IPPS/SPDP, 1998)

Formal Methods for High-Performance Linear Algebra Libraries. - John A. Gunnels; Robert A. van de Geijn (The Architecture of Scientific Software, 2000)

Fault-Tolerant High-Performance Matrix Multiplication: Theory and Practice. - John A. Gunnels; Robert A. van de Geijn; Daniel S. Katz; Enrique S. Quintana-Ortí (DSN, 2001)

A Family of High-Performance Matrix Multiplication Algorithms. - John A. Gunnels; Greg Henry; Robert A. van de Geijn (International Conference on Computational Science (1), 2001)

FLAME: Formal Linear Algebra Methods Environment. - John A. Gunnels; Fred G. Gustavson; Greg Henry; Robert A. van de Geijn (ACM Trans. Math. Softw., 2001)

A Recursive Formulation of the Inversion of Symmetric Positive Definite Matrices in Packed Storage Data Format. - Bjarne Stig Andersen; John A. Gunnels; Fred G. Gustavson; Jerzy Wasniewski (PARA, 2002)

An overview of the BlueGene/L Supercomputer. - Narasimha R. Adiga; George Almási 001; George S. Almási; Yariv Aridor; Rajkishore Barik; Daniel K. Beece; Ralph Bellofatto; Gyan Bhanot; Randy Bickford; Matthias A. Blumrich; Arthur A. Bright; José R. Brunheroto; et al. (SC, 2002)

A High-Performance SIMD Floating Point Unit for BlueGene/L: Architecture, Compilation, and Algorithm Design. - Leonardo R. Bachega; Siddhartha Chatterjee; Kenneth A. Dockser; John A. Gunnels; Manish Gupta 002; Fred G. Gustavson; Christopher A. Lapkowski; Gary K. Liu; Mark P. Mendell; Charles D. Wait; T. J. Christopher Ward (IEEE PACT, 2004)

Rapid Development of High-Performance Linear Algebra Libraries. - Paolo Bientinesi; John A. Gunnels; Fred G. Gustavson; Greg Henry; Margaret E. Myers; Enrique S. Quintana-Ortí; Robert A. van de Geijn (PARA, 2004)

A New Array Format for Symmetric and Triangular Matrices. - John A. Gunnels; Fred G. Gustavson (PARA, 2004)

A Family of High-Performance Matrix Multiplication Algorithms. - John A. Gunnels; Fred G. Gustavson; Greg Henry; Robert A. van de Geijn (PARA, 2004)

Architecture and Performance of the BlueGene/L Message Layer. - George Almási 001; Charles Archer; John A. Gunnels; Philip Heidelberger; Xavier Martorell; José E. Moreira (PVM/MPI, 2004)

Unlocking the Performance of the BlueGene/L Supercomputer. - George Almási 001; Siddhartha Chatterjee; Alan Gara; John A. Gunnels; Manish Gupta 002; Amy Henning; José E. Moreira; Robert Walkup (SC, 2004)

Early Experience with Scientific Applications on the Blue Gene/L Supercomputer. - George Almási 001; Gyan Bhanot; Dong Chen 005; Maria Eleftheriou; Blake G. Fitch; Alan Gara; Robert S. Germain; John A. Gunnels; Manish Gupta 002; Philip Heidelberger; Michael Pitman; Aleksandr Rayshubskiy; et al. (Euro-Par, 2005)

Large-Scale First-Principles Molecular Dynamics simulations on the BlueGene/L Platform using the Qbox code. - François Gygi; Robert K. Yates; Juergen Lorenz; Erik W. Draeger; Franz Franchetti; Christoph W. Ueberhuber; Bronis R. de Supinski; Stefan Kral; John A. Gunnels; James C. Sexton (SC, 2005)

Design and implementation of message-passing services for the Blue Gene/L supercomputer. - George Almási 001; Charles Archer; José G. Castaños; John A. Gunnels; C. Christopher Erway; Philip Heidelberger; Xavier Martorell; José E. Moreira; Kurt W. Pinnow; Joe Ratterman; Burkhard D. Steinmacher-Burow; William Gropp; et al. (IBM J. Res. Dev., 2005)

Design and exploitation of a high-performance SIMD floating-point unit for Blue Gene/L. - Siddhartha Chatterjee; Leonardo R. Bachega; Peter Bergner; Kenneth A. Dockser; John A. Gunnels; Manish Gupta 002; Fred G. Gustavson; Christopher A. Lapkowski; Gary K. Liu; Mark P. Mendell; Rohini D. Nair; Charles D. Wait; et al. (IBM J. Res. Dev., 2005)

Blue Gene/L performance tools. - Xavier Martorell; Nils Smeds; Robert Walkup; José R. Brunheroto; George Almási 001; John A. Gunnels; Luiz De Rose; Jesús Labarta; Francesc Escalé; Judit Giménez; Harald Servat; José E. Moreira (IBM J. Res. Dev., 2005)

A fully portable high performance minimal storage hybrid format cholesky algorithm. - Bjarne Stig Andersen; John A. Gunnels; Fred G. Gustavson; John K. Reid; Jerzy Wasniewski (ACM Trans. Math. Softw., 2005)

The science of deriving dense linear algebra algorithms. - Paolo Bientinesi; John A. Gunnels; Margaret E. Myers; Enrique S. Quintana-Ortí; Robert A. van de Geijn (ACM Trans. Math. Softw., 2005)

Achieving High Performance on the BlueGene/L Supercomputer. - George S. Almási; Gyan Bhanot; Siddhartha Chatterjee; Alan Gara; John A. Gunnels; Manish Gupta 002; Amy Henning; José E. Moreira; James C. Sexton; Bob Walkup; Alessandro Curioni; Charles Archer; et al. (Parallel Processing for Scientific Computing, 2006)

Is Cache-Oblivious DGEMM Viable? - John A. Gunnels; Fred G. Gustavson; Keshav Pingali; Kamen Yotov (PARA, 2006)

Minimal Data Copy for Dense Linear Algebra Factorization. - Fred G. Gustavson; John A. Gunnels; James C. Sexton (PARA, 2006)

Gordon Bell finalists I - Large scale drop impact analysis of mobile phone using ADVC on Blue Gene/L. - Hiroshi Akiba; Tomonobu Ohyama; Yoshinoir Shibata; Kiyoshi Yuyama; Yoshikazu Katai; Ryuichi Takeuchi; Takeshi Hoshino; Shinobu Yoshimura; Hirohisa Noguchi; Manish Gupta 002; John A. Gunnels; Vernon Austel; et al. (SC, 2006)

Gordon Bell finalists I - Large-scale electronic structure calculations of high-Z metals on the BlueGene/L platform. - François Gygi; Erik W. Draeger; Martin Schulz 001; Bronis R. de Supinski; John A. Gunnels; Vernon Austel; James C. Sexton; Franz Franchetti; Stefan Kral; Christoph W. Ueberhuber; Juergen Lorenz (SC, 2006)

Extending stability beyond CPU millennium: a micron-scale atomistic simulation of Kelvin-Helmholtz instability. - James N. Glosli; David F. Richards; K. J. Caspersen; R. E. Rudd; John A. Gunnels; Frederick H. Streitz (SC, 2007)

An experimental comparison of cache-oblivious and cache-conscious programs. - Kamen Yotov; Thomas Roeder; Keshav Pingali; John A. Gunnels; Fred G. Gustavson (SPAA, 2007)

Optimization of Fast Fourier Transforms on the Blue Gene/L Supercomputer. - Yogish Sabharwal; Saurabh Kumar Garg 001; Rahul Garg 001; John A. Gunnels; Ramendra K. Sahoo (HiPC, 2008)

Optimization of BLAS on the Cell Processor. - Vaibhav Saxena; Prashant Agrawal; Yogish Sabharwal; Vijay K. Garg; Vimitha A. Kuruvilla; John A. Gunnels (HiPC, 2008)

Fine-grained parallelization of the Car - Parrinello ab initio molecular dynamics method on the IBM Blue Gene/L supercomputer. - Eric J. Bohm; Abhinav Bhatele; Laxmikant V. Kalé; Mark E. Tuckerman; Sameer Kumar 001; John A. Gunnels; Glenn J. Martyna (IBM J. Res. Dev., 2008)

BlueGene/L applications: Parallelism On a Massive Scale. - Bronis R. de Supinski; Martin Schulz 001; Vasily V. Bulatov; William H. Cabot; Bor Chan; Andrew W. Cook; Erik W. Draeger; James N. Glosli; Jeffrey A. Greenough; Keith W. Henderson; Alison Kubota; Steve Louis; et al. (Int. J. High Perform. Comput. Appl., 2008)

MPI Collective Communications on The Blue Gene/P Supercomputer: Algorithms and Optimizations. - Ahmad Faraj; Sameer Kumar 001; Brian E. Smith; Amith R. Mamidala; John A. Gunnels (Hot Interconnects, 2009)

MPI collective communications on the blue gene/p supercomputer: algorithms and optimizations. - Ahmad Faraj; Sameer Kumar 001; Brian E. Smith; Amith R. Mamidala; John A. Gunnels; Philip Heidelberger (ICS, 2009)

Petascale computing with accelerators. - Michael Kistler; John A. Gunnels; Daniel A. Brokenshire; Brad Benton (PPoPP, 2009)

Beyond homogeneous decomposition: scaling long-range forces on Massively Parallel Systems. - David F. Richards; James N. Glosli; Bor Chan; Milo R. Dorr; Erik W. Draeger; Jean-Luc Fattebert; William D. Krauss; Thomas E. Spelce; Frederick H. Streitz; Michael P. Surh; John A. Gunnels (SC, 2009)

Programming the Linpack benchmark for Roadrunner. - Michael Kistler; John A. Gunnels; Daniel A. Brokenshire; Brad Benton (IBM J. Res. Dev., 2009)

Programming the Linpack benchmark for the IBM PowerXCell 8i processor. - Michael Kistler; John A. Gunnels; Daniel A. Brokenshire; Brad Benton (Sci. Program., 2009)

Architecture of the Component Collective Messaging Interface. - Sameer Kumar 001; Ahmad Faraj; Amith R. Mamidala; Brian E. Smith; Gábor Dózsa; Bob Cernohous; John A. Gunnels; Douglas Miller; Joseph Ratterman; Philip Heidelberger (Int. J. High Perform. Comput. Appl., 2010)

Efficient high-precision matrix algebra on parallel architectures for nonlinear combinatorial optimization. - John A. Gunnels; Jon Lee 001; Susan Margulies (Math. Program. Comput., 2010)

Massive-Scale Analytics. - Amol Ghoting; John A. Gunnels; Mark S. Squillante (Encyclopedia of Parallel Computing, 2011)

PLAPACK. - John A. Gunnels (Encyclopedia of Parallel Computing, 2011)

Toward real-time modeling of human heart ventricles at cellular resolution: simulation of drug-induced arrhythmias. - Arthur A. Mirin; David F. Richards; James N. Glosli; Erik W. Draeger; Bor Chan; Jean-Luc Fattebert; William D. Krauss; Tomas Oppelstrup; John Jeremy Rice; John A. Gunnels; Viatcheslav Gurev; Changhoan Kim; et al. (SC, 2012)

Deriving dense linear algebra libraries. - Paolo Bientinesi; John A. Gunnels; Margaret E. Myers; Enrique S. Quintana-Ortí; Tyler Rhodes; Robert A. van de Geijn; Field G. Van Zee (Formal Aspects Comput., 2013)

Science at LLNL with IBM Blue Gene/Q. - Brian Carnes; Bor Chan; Erik W. Draeger; Jean-Luc Fattebert; Larry Fried; James N. Glosli; William D. Krauss; Steve H. Langer; Rose McCallen; Arthur A. Mirin; Fady Najjar; Albert L. Nichols; et al. (IBM J. Res. Dev., 2013)

Trends and outlook for the massive-scale analytics stack. - Amol Ghoting; John A. Gunnels; Prabhanjan Kambadur; Edwin P. D. Pednault; Mark S. Squillante (IBM J. Res. Dev., 2013)

Design for low power and power management in IBM Blue Gene/Q. - Krishnan Sugavanam; Chen-Yong Cher; John A. Gunnels; Ruud A. Haring; Philip Heidelberger; Hans M. Jacobson; Moyra K. McManus; D. P. Paulsen; David L. Satterfield; Yutaka Sugawara; Robert Walkup (IBM J. Res. Dev., 2013)

Optimizing the performance of streaming numerical kernels on the IBM Blue Gene/P PowerPC 450 processor. - Tareq M. Malas; Aron J. Ahmadia; Jed Brown; John A. Gunnels; David E. Keyes (Int. J. High Perform. Comput. Appl., 2013)

Parallel deep neural network training for LVCSR tasks using blue gene/Q. - Tara N. Sainath; I-Hsin Chung; Bhuvana Ramabhadran; Michael Picheny; John A. Gunnels; Brian Kingsbury; George Saon; Vernon Austel; Upendra V. Chaudhari (INTERSPEECH, 2014)

Scalable Community Detection with the Louvain Algorithm. - Xinyu Que; Fabio Checconi; Fabrizio Petrini; John A. Gunnels (IPDPS, 2015)

Massively parallel models of the human circulatory system. - Amanda Randles; Erik W. Draeger; Tomas Oppelstrup; Liam Krauss; John A. Gunnels (SC, 2015)

Optimizing Sparse Linear Algebra for Large-Scale Graph Analytics. - Daniele Buono; John A. Gunnels; Xinyu Que; Fabio Checconi; Fabrizio Petrini; Tai-Ching Tuan; Chris Long (Computer, 2015)

Active Memory Cube: A processing-in-memory architecture for exascale systems. - Ravi Nair; Samuel Antão; Carlo Bertolli; Pradip Bose; José R. Brunheroto; Tong Chen 001; Chen-Yong Cher; Carlos H. A. Costa; J. Doi; Constantinos Evangelinos; Bruce M. Fleischer; Thomas W. Fox; et al. (IBM J. Res. Dev., 2015)

An Early Performance Study of Large-Scale POWER8 SMP Systems. - Xing Liu; Daniele Buono; Fabio Checconi; Jee W. Choi; Xinyu Que; Fabrizio Petrini; John A. Gunnels; Jeff Stuecheli (IPDPS, 2016)

The BLIS Framework: Experiments in Portability. - Field G. Van Zee; Tyler M. Smith; Bryan Marker; Tze Meng Low; Robert A. van de Geijn; Francisco D. Igual; Mikhail Smelyanskiy; Xianyi Zhang; Michael Kistler; Vernon Austel; John A. Gunnels; Lee Killough (ACM Trans. Math. Softw., 2016)

A knowledge and reasoning toolkit for cognitive applications. - Mustafa Canim; Cristina Cornelio; Robert Farrell; Achille Fokoue; Kyle Yingkai Gao; John A. Gunnels; Arun Iyengar; Ryan Musa; Mariano Rodriguez-Muro; Rosario Uceda-Sosa (HotWeb, 2017)

Massively parallel first-principles simulation of electron dynamics in materials. - Erik W. Draeger; Xavier Andrade; John A. Gunnels; Abhinav Bhatele; Andre Schleife; Alfredo A. Correa (J. Parallel Distributed Comput., 2017)

Parallel Deep Neural Network Training for Big Data on Blue Gene/Q. - I-Hsin Chung; Tara N. Sainath; Bhuvana Ramabhadran; Michael Picheny; John A. Gunnels; Vernon Austel; Upendra V. Chaudhari; Brian Kingsbury (IEEE Trans. Parallel Distributed Syst., 2017)

Preparation and optimization of a diverse workload for a large-scale heterogeneous system. - Ian Karlin; Yoonho Park; Bronis R. de Supinski; Peng Wang; Bert Still; David Beckingsale; Robert Blake; Tong Chen 001; Guojing Cong; Carlos H. A. Costa; Johann Dahm; Giacomo Domeniconi; et al. (SC, 2019)

cuQuantum SDK: A High-Performance Library for Accelerating Quantum Science. - Harun Bayraktar; Ali Charara 003; David Clark; Saul Cohen; Timothy B. Costa; Yao-Lung L. Fang; Yang Gao; Jack Guan; John A. Gunnels; Azzam Haidar; Andreas Hehn; Markus Höhnerbach; et al. (QCE, 2023)

Hardware Trends Impacting Floating-Point Computations In Scientific Applications. - Jack J. Dongarra; John A. Gunnels; Harun Bayraktar; Azzam Haidar; Dan Ernst (CoRR, 2024)