A Simulation and Optimization Environment for Models in Computational Neurobiology. - Blaz Zupan; John A. Halter (EUROSIM, 1995)

Web-Enabled Knowledge-Based Analysis of Genetic Data. - Peter Juvan; Blaz Zupan; Janez Demsar; Ivan Bratko; John A. Halter; Adam Kuspa; Gad Shaulsky (ISMDA, 2001)

GenePath: A Computer Program for Genetic Pathway Discovery from Mutant Data. - Janez Demsar; Blaz Zupan; Ivan Bratko; Adam Kuspa; John A. Halter; Robert J. Beck; Gad Shaulsky (MedInfo, 2001)

GenePath: a system for inference of genetic networks and proposal of genetic experiments. - Blaz Zupan; Ivan Bratko; Janez Demsar; Peter Juvan; Tomaz Curk; Urban Borstnik; J. Robert Beck; John A. Halter; Adam Kuspa; Gad Shaulsky (Artif. Intell. Medicine, 2003)

GenePath: a system for automated construction of genetic networks from mutant data. - Blaz Zupan; Janez Demsar; Ivan Bratko; Peter Juvan; John A. Halter; Adam Kuspa; Gad Shaulsky (Bioinform., 2003)

Discovery of Genetic Networks Through Abduction and Qualitative Simulation. - Blaz Zupan; Ivan Bratko; Janez Demsar; Peter Juvan; Adam Kuspa; John A. Halter; Gad Shaulsky (Computational Discovery of Scientific Knowledge, 2007)