Biological Evaluation of d2, an Algorithm for High-Performance Sequence Comparison. - Winston Hide; John Burke; Daniel B. da Vison (J. Comput. Biol., 1994)

CRAWview: for viewing splicing variation, gene families, and polymorphism in clusters of ESTs and full-length sequences. - Amanda Chou; John Burke (Bioinform., 1999)

The Discovery Phase of User Centred Design: Putting Users First in the Design of Smart Internet Technologies. - Supriya Singh; John Burke; Paul Turner; Maurice Castro (ACIS, 2003)

The Effect of Organizational, Worker and Project Characteristics on the IT Project Outsourcing Decision. - Timothy G. Babbitt; Prasanna P. Karhade; John Burke (AMCIS, 2004)

The Implication of Complexity Theory on Real Option Analysis in IT Portfolio Management. - John Burke (AMCIS, 2007)

Classification of Spatially Localized Oscillations in Periodically Forced Dissipative Systems. - John Burke; Arik Yochelis; Edgar Knobloch (SIAM J. Appl. Dyn. Syst., 2008)

View Discovery in OLAP Databases through Statistical Combinatorial Optimization. - Cliff A. Joslyn; John Burke; Terence Critchlow; Nick Hengartner; Emilie Hogan (SSDBM, 2009)

To Snake or Not to Snake in the Planar Swift-Hohenberg Equation. - Daniele Avitabile; David J. B. Lloyd; John Burke; Edgar Knobloch; Björn Sandstede (SIAM J. Appl. Dyn. Syst., 2010)

Localized States in an Extended Swift-Hohenberg Equation. - John Burke; Jonathan H. P. Dawes (SIAM J. Appl. Dyn. Syst., 2012)

From Canards of Folded Singularities to Torus Canards in a Forced van der Pol Equation. - John Burke; Mathieu Desroches; Albert Granados; Tasso J. Kaper; Martin Krupa; Theodore Vo (J. Nonlinear Sci., 2016)

Internet of Things (IoT) and Electrical and Computer Engineering Curriculums. - Neeraj Magotra; Amer Qouneh; John Burke (MWSCAS, 2019)

Solving the Emergency Care Patient Pathway by a New Integrated Simulation-Optimisation Approach. - Wahid Ghazi Allihaibi; Mahmoud Masoud; Mohammed Elhenawy; Shi Qiang Liu; John Burke; Azharul Karim (IEEE Access, 2021)

Reduced Gate Count for Quantum State Preparation of 2D Data. - John Burke; Biswajit Basu; Ciaran McGoldrick (QCE, 2023)

Deterministic Quantum Search via Recursive Oracle Expansion. - John Burke; Ciaran McGoldrick (CoRR, 2025)