An Introduction to n-Categories. - John C. Baez (Category Theory and Computer Science, 1997)

Loop quantum gravity. - John C. Baez (SODA, 2005)

Computation and the Periodic Table. - John Baez (LICS, 2009)

A Characterization of Entropy in Terms of Information Loss. - John C. Baez; Tobias Fritz; Tom Leinster (Entropy, 2011)

Algorithmic thermodynamics. - John C. Baez; Mike Stay (Math. Struct. Comput. Sci., 2012)

A Bayesian Characterization of Relative Entropy. - John C. Baez; Tobias Fritz (CoRR, 2014)

Quantum techniques for studying equilibrium in reaction networks. - John C. Baez; Brendan Fong (J. Complex Networks, 2015)

Quantropy. - John C. Baez; Blake S. Pollard (Entropy, 2015)

The Lebesgue universal covering problem. - John C. Baez; Karine Bagdasaryan; Philip Gibbs (J. Comput. Geom., 2015)

Relative Entropy in Biological Systems. - John C. Baez; Blake S. Pollard (Entropy, 2016)

Network Models from Petri Nets with Catalysts. - John C. Baez; John D. Foley; Joe Moeller (Compositionality, 2019)

Enriched Lawvere Theories for Operational Semantics. - John C. Baez; Christian Williams (ACT, 2019)

Operads for Designing Systems of Systems. - John C. Baez; John Foley (CoRR, 2020)

Open Petri nets. - John C. Baez; Jade Master (Math. Struct. Comput. Sci., 2020)

Categories of Nets. - John C. Baez; Fabrizio Genovese; Jade Master; Michael Shulman (LICS, 2021)

The Fundamental Theorem of Natural Selection. - John C. Baez (Entropy, 2021)

Structured versus Decorated Cospans. - John C. Baez; Kenny Courser; Christina Vasilakopoulou (Compositionality, 2022)

Compositional Modeling with Stock and Flow Diagrams. - John Baez; Xiaoyan Li; Sophie Libkind; Nathaniel Osgood; Evan Patterson (ACT, 2022)

An Algebraic Framework for Stock & Flow Diagrams and Dynamical Systems Using Category Theory. - Xiaoyan Li; John Baez; Sophie Libkind; Eric Redekopp; Long Pham; Nathaniel D. Osgood (CoRR, 2022)

Rényi Entropy and Free Energy. - John C. Baez (Entropy, 2022)