rapmad: Robust Analysis of Peptide Microarray Data. - Bernhard Y. Renard; Martin Löwer; Yvonne Kuhne; Ulf Reimer; Andree Rothermel; Özlem Türeci; John C. Castle; Ugur Sahin (BMC Bioinform., 2011)

RNA-Seq Atlas - a reference database for gene expression profiling in normal tissue by next-generation sequencing. - Markus Krupp; Jens U. Marquardt; Ugur Sahin; Peter R. Galle; John C. Castle; Andreas Teufel (Bioinform., 2012)

Confidence-based Somatic Mutation Evaluation and Prioritization. - Martin Löwer; Bernhard Y. Renard; Jos de Graaf; Meike Wagner; Claudia Paret; Christoph Kneip; Özlem Türeci; Mustafa Diken; Cedrik M. Britten; Sebastian Kreiter; Michael Koslowski; John C. Castle; et al. (PLoS Comput. Biol., 2012)

Galaxy LIMS for next-generation sequencing. - Jelle Scholtalbers; Jasmin Rößler; Patrick Sorn; Jos de Graaf; Valesca Boisguérin; John C. Castle; Ugur Sahin (Bioinform., 2013)

The SysteMHC Atlas project. - Wenguang Shao; Patrick G. A. Pedrioli; Witold Wolski; Christian Scurtescu; Emanuel Schmid; Juan Antonio Vizcaíno; Mathieu Courcelles; Heiko Schuster; Daniel Kowalewski; Fabio Marino; Cecilia S. Lindestam Arlehamn; Kerrie Vaughan; et al. (Nucleic Acids Res., 2018)