Minimal Flows Arising from Substitutions of Non-Constant Length. - John C. Martin (Math. Syst. Theory, 1973)

Book review: Systems Software Tools by Ted J. Biggerstafff: Prentice-Hall, 1986. - John C. Martin (ACM SIGPLAN Notices, 1986)

New flow cytometric capabilities at the national flow cytometry resource. - L. Scott Cram; John C. Martin; John A. Steinkamp; Thomas M. Yoshida; Tudor N. Buican; Babetta L. Marrone; James H. Jett; Gary Salzman; Larry Sklar (Proc. IEEE, 1992)

Nanosecond pulse techniques. - John C. Martin (Proc. IEEE, 1992)

Visualization for Telecommunications Network Planning. - John C. Martin (ICCG, 1993)

Nematode.net: a tool for navigating sequences from parasitic and free-living nematodes. - Todd Wylie; John C. Martin; Michael Dante; Makedonka Dautova Mitreva; Sandra W. Clifton; Asif T. Chinwalla; Robert H. Waterston; Richard K. Wilson; James P. McCarter (Nucleic Acids Res., 2004)

Formal methods software engineering for the CARA system. - John C. Martin (Int. J. Softw. Tools Technol. Transf., 2004)

Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics. - John C. Martin; Sahar Abubucker; Todd Wylie; Yong Yin; Zhengyuan Wang; Makedonka Dautova Mitreva (Nucleic Acids Res., 2009)

Nematode.net update 2011: addition of data sets and tools featuring next-generation sequencing data. - John C. Martin; Sahar Abubucker; Esley Heizer; Christina M. Taylor; Makedonka Dautova Mitreva (Nucleic Acids Res., 2012)

Helminth.net: expansions to Nematode.net and an introduction to Trematode.net. - John C. Martin; Bruce A. Rosa; Philip Ozersky; Kymberlie Hallsworth-Pepin; Xu Zhang; Veena Bhonagiri-Palsikar; Rahul Tyagi; Qi Wang; Young-Jun Choi; Xin Gao; Samantha N. McNulty; Paul J. Brindley; et al. (Nucleic Acids Res., 2015)