Extraction of the Number of Peroxisomes in Yeast Cells by Automated Image Analysis. - Antti Niemistö; Jyrki Selinummi; Ramsey Saleem; Ilya Shmulevich; John D. Aitchison; Olli Yli-Harja (EMBC, 2006)

Trade-off between Responsiveness and Noise Suppression in Biomolecular System Responses to Environmental Cues. - Alexander V. Ratushny; Ilya Shmulevich; John D. Aitchison (PLoS Comput. Biol., 2011)

PhosphoChain: a novel algorithm to predict kinase and phosphatase networks from high-throughput expression data. - Wei-Ming Chen; Samuel A. Danziger; Jung-Hsien Chiang; John D. Aitchison (Bioinform., 2013)

Metallochaperones Regulate Intracellular Copper Levels. - Wyming Lee Pang; Amardeep Kaur; Alexander V. Ratushny; Aleksandar Cvetkovic; Sunil Kumar; Min Pan; Adam P. Arkin; John D. Aitchison; Michael W. W. Adams; Nitin S. Baliga (PLoS Comput. Biol., 2013)

Bicluster Sampled Coherence Metric (BSCM) provides an accurate environmental context for phenotype predictions. - Samuel A. Danziger; David J. Reiss; Alexander V. Ratushny; Jennifer J. Smith; Christopher L. Plaisier; John D. Aitchison; Nitin S. Baliga (BMC Syst. Biol., 2015)

Integrative structure and functional anatomy of a nuclear pore complex. - Seung Joong Kim; Javier Fernandez-Martinez; Ilona Nudelman; Yi Shi; Wenzhu Zhang; Barak Raveh; Thurston Herricks; Brian D. Slaughter; Joanna A. Hogan; Paula Upla; Ilan E. Chemmama; Riccardo Pellarin; et al. (Nat., 2018)