Polish metric spaces: their classification and isometry groups. - John D. Clemens; Su Gao; Alexander S. Kechris (Bull. Symb. Log., 2001)

Classifying Borel automorphisms. - John D. Clemens (J. Symb. Log., 2007)

Weakly pointed trees and partial injections. - John D. Clemens (J. Symb. Log., 2008)

Isomorphism of Homogeneous Structures. - John D. Clemens (Notre Dame J. Formal Log., 2009)

Isometry of Polish metric spaces. - John D. Clemens (Ann. Pure Appl. Log., 2012)

On the classification of vertex-transitive structures. - John D. Clemens; Samuel Coskey; Stephanie Potter (Arch. Math. Log., 2019)

The classification of countable models of set theory. - John D. Clemens; Samuel Coskey; Samuel Dworetzky (Math. Log. Q., 2020)

New jump operators on equivalence relations. - John D. Clemens; Samuel Coskey (J. Math. Log., 2022)

Computable Reducibility of Equivalence Relations and an Effective jump operator. - John D. Clemens; Samuel Coskey; Gianni Krakoff (J. Symb. Log., 2023)