Review of ring perception algorithms for chemical graphs. - Geoffrey M. Downs; Valerie J. Gillet; John D. Holliday; Michael F. Lynch (J. Chem. Inf. Comput. Sci., 1989)

Theoretical aspects of ring perception and development of the extended set of smallest rings concept. - Geoffrey M. Downs; Valerie J. Gillet; John D. Holliday; Michael F. Lynch (J. Chem. Inf. Comput. Sci., 1989)

Computer storage and retrieval of generic chemical structures in patents. 9. An algorithm to find the extended set of smallest rings in structurally explicit generics. - Geoffrey M. Downs; Valerie J. Gillet; John D. Holliday; Michael F. Lynch (J. Chem. Inf. Comput. Sci., 1989)

Computer storage and retrieval of generic chemical structures in patents. 10. Assignment and logical bubble-up of ring screens for structurally explicit generics. - Geoffrey M. Downs; Valerie J. Gillet; John D. Holliday; Michael F. Lynch (J. Chem. Inf. Comput. Sci., 1989)

Computer storage and retrieval of generic chemical structures in patents. 11. Theoretical aspects of the use of structure languages in a retrieval system. - Winfried Dethlefsen; Michael F. Lynch; Valerie J. Gillet; Geoffrey M. Downs; John D. Holliday; John M. Barnard (J. Chem. Inf. Comput. Sci., 1991)

Computer storage and retrieval of generic chemical structures in patents. 12. Principles of search operations involving parameter lists: matching-relations, user-defined match levels, and transition from the reduced graph search to the refined search. - Winfried Dethlefsen; Michael F. Lynch; Valerie J. Gillet; Geoffrey M. Downs; John D. Holliday; John M. Barnard (J. Chem. Inf. Comput. Sci., 1991)

Computer storage and retrieval of generic chemical structures in patents. 13. Reduced graph generation. - Valerie J. Gillet; Geoffrey M. Downs; John D. Holliday; Michael F. Lynch; Winfried Dethlefsen (J. Chem. Inf. Comput. Sci., 1991)

Computer storage and retrieval of generic chemical structures in patents. 14. Fragment generation from generic structures. - John D. Holliday; Geoffrey M. Downs; Valerie J. Gillet; Michael F. Lynch (J. Chem. Inf. Comput. Sci., 1992)

Computer storage and retrieval of generic chemical structures in patents. 15. Generation of topological fragment descriptors from nontopological representations of generic structure components. - John D. Holliday; Geoffrey M. Downs; Valerie J. Gillet; Michael F. Lynch (J. Chem. Inf. Comput. Sci., 1993)

Evaluation of the screening stages of the Sheffield Research Project on Computer Storage and Retrieval of Generic Chemical Structures in Patents. - John D. Holliday; Geoffrey M. Downs; Valerie J. Gillet; Michael F. Lynch; Winfried Dethlefsen (J. Chem. Inf. Comput. Sci., 1994)

Computer Storage and Retrieval of Generic Chemical Structures in Patents, 16. The Refined Search: An Algorithm for Matching Components of Generic Chemical Structures at the Atom-Bond Level. - John D. Holliday; Michael F. Lynch (J. Chem. Inf. Comput. Sci., 1995)

Computer Storage and Retrieval of Generic Chemical Structures in Patents, 17. Evaluation of the Refined Search. - John D. Holliday; Michael F. Lynch (J. Chem. Inf. Comput. Sci., 1995)

The Sheffield Generic Structures Project-a Retrospective Review. - Michael F. Lynch; John D. Holliday (J. Chem. Inf. Comput. Sci., 1996)

Calculation of Intersubstituent Similarity Using R-Group Descriptors. - John D. Holliday; Stephen P. Jelfs; Peter Willett 002; Peter Gedeck (J. Chem. Inf. Comput. Sci., 2003)

Analysis and Display of the Size Dependence of Chemical Similarity Coefficients. - John D. Holliday; Naomie Salim; Martin Whittle; Peter Willett 002 (J. Chem. Inf. Comput. Sci., 2003)

Combination of Fingerprint-Based Similarity Coefficients Using Data Fusion. - Naomie Salim; John D. Holliday; Peter Willett 002 (J. Chem. Inf. Comput. Sci., 2003)

Chemoinformatics Research at the University of Sheffield: A History and Citation Analysis. - Neal Bishop; Valerie J. Gillet; John D. Holliday; Peter Willett 002 (J. Inf. Sci., 2003)

Clustering Files of Chemical Structures Using the Fuzzy k-Means Clustering Method. - John D. Holliday; Sarah L. Rodgers; Peter Willett 002; Min-You Chen; Mahdi Mahfouf; Kevin Lawson; Graham Mullier (J. Chem. Inf. Model., 2004)

Structure and singly occupied molecular orbital analysis of anionic tautomers of guanine. - Maciej Haranczyk; John D. Holliday; Peter Willett 002; Maciej Gutowski (J. Comput. Chem., 2008)

Comparison of Similarity Coefficients for Clustering and Compound Selection. - Maciej Haranczyk; John D. Holliday (J. Chem. Inf. Model., 2008)

Enhancing the Effectiveness of Fingerprint-Based Virtual Screening: Use of Turbo Similarity Searching and of Fragment Frequencies of Occurrence. - Shereena M. Arif; Jérôme Hert; John D. Holliday; Nurul Malim; Peter Willett 002 (PRIB, 2009)

Analysis and use of fragment-occurrence data in similarity-based virtual screening. - Shereena M. Arif; John D. Holliday; Peter Willett 002 (J. Comput. Aided Mol. Des., 2009)

A Machine Learning Approach to Weighting Schemes in the Data Fusion of Similarity Coefficients. - Jenny Chen; John D. Holliday; John Bradshaw (J. Chem. Inf. Model., 2009)

Effect of Data Standardization on Chemical Clustering and Similarity Searching. - Chia-Wei Chu; John D. Holliday; Peter Willett 002 (J. Chem. Inf. Model., 2009)

Comparison of Nonbinary Similarity Coefficients for Similarity Searching, Clustering and Compound Selection. - Aysha Al Khalifa; Maciej Haranczyk; John D. Holliday (J. Chem. Inf. Model., 2009)

Turbo similarity searching: Effect of fingerprint and dataset on virtual-screening performance. - Eleanor J. Gardiner; Valerie J. Gillet; Maciej Haranczyk; Jérôme Hert; John D. Holliday; Nurul Malim; Yogendra Patel; Peter Willett 002 (Stat. Anal. Data Min., 2009)

Inverse Frequency Weighting of Fragments for Similarity-Based Virtual Screening. - Shereena M. Arif; John D. Holliday; Peter Willett 002 (J. Chem. Inf. Model., 2010)

Representation and Searching of Chemical-Structure Information in Patents. - John D. Holliday; Peter Willett 002 (Current Challenges in Patent Information Retrieval, 2011)

Multiple search methods for similarity-based virtual screening: analysis of search overlap and precision. - John D. Holliday; Evangelos Kanoulas; Nurul Malim; Peter Willett 002 (J. Cheminformatics, 2011)

Interactions Between Weighting Scheme and Similarity Coefficient in Similarity-Based Virtual Screening. - John D. Holliday; Peter Willett 002; Hua Xiang (Int. J. Chemoinformatics Chem. Eng., 2012)

Similarity Coefficients for Binary Chemoinformatics Data: Overview and Extended Comparison Using Simulated and Real Data Sets. - Roberto Todeschini; Viviana Consonni; Hua Xiang; John D. Holliday; Paolo Massimo Buscema; Peter Willett 002 (J. Chem. Inf. Model., 2012)

Comparison of chemical similarity measures using different numbers of query structures. - Shereena M. Arif; John D. Holliday; Peter Willett 002 (J. Inf. Sci., 2013)

The use of 2D fingerprint methods to support the assessment of structural similarity in orphan drug legislation. - Pedro Franco; Nuria Porta; John D. Holliday; Peter Willett 002 (J. Cheminformatics, 2014)

Maximum Common Substructure-Based Data Fusion in Similarity Searching. - Edmund Duesbury; John D. Holliday; Peter Willett 002 (J. Chem. Inf. Model., 2015)

Calculation of Substructural Analysis Weights Using a Genetic Algorithm. - John D. Holliday; Nor Sani; Peter Willett 002 (J. Chem. Inf. Model., 2015)